Construct: ORF ccsbBroadEn_01275
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000424.1_s300c1, BRDN0000391683
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRIM1 (5557)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5557 | PRIM1 | DNA primase subunit 1 | NM_000946.3 | 100% | 100% | |
| 2 | mouse | 19075 | Prim1 | DNA primase, p49 subunit | NM_008921.2 | 87.3% | 90.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1326
- ORF length:
- 1260
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GACGTTTGAC CCCACCGAGC TGCCCGAGCT GCTTAAACTT TATTACCGGA 121 GGCTCTTTCC CTACTCTCAG TACTATCGCT GGCTCAACTA CGGTGGAGTG ATAAAGAATT 181 ACTTTCAACA CCGTGAATTT TCATTCACAT TGAAAGATGA TATTTACATT CGCTACCAAT 241 CCTTCAACAA CCAGAGTGAT CTGGAAAAGG AGATGCAGAA AATGAATCCA TACAAGATTG 301 ATATAGGCGC AGTATATTCT CACAGACCCA ATCAACACAA TACAGTGAAG CTGGGAGCTT 361 TCCAGGCTCA GGAAAAAGAA CTGGTATTTG ACATTGACAT GACAGACTAT GACGATGTGA 421 GGAGATGTTG TAGTTCTGCA GACATATGTC CTAAGTGCTG GACCCTCATG ACAATGGCCA 481 TACGCATCAT TGACAGAGCA TTGAAGGAGG ACTTTGGATT TAAGCATCGT CTCTGGGTAT 541 ATTCTGGAAG GAGAGGTGTT CATTGTTGGG TCTGTGATGA ATCAGTTAGA AAACTGTCTT 601 CTGCAGTACG TTCTGGGATA GTTGAGTATT TGAGCCTTGT AAAGGGTGGT CAAGACGTTA 661 AAAAGAAAGT TCACCTAAGT GAAAAAATTC ACCCTTTTAT CAGAAAATCT ATAAACATAA 721 TAAAAAAATA CTTTGAAGAA TATGCCTTGG TTAATCAAGA TATTCTCGAA AATAAAGAAA 781 GCTGGGATAA GATTTTAGCC CTTGTTCCTG AAACAATTCA TGATGAACTT CAACAAAGCT 841 TCCAAAAGTC TCACAATTCA CTTCAGCGTT GGGAGCACTT GAAGAAAGTA GCCAGCAGAT 901 ATCAGAATAA CATCAAAAAT GACAAATATG GACCCTGGCT GGAGTGGGAG ATTATGCTCC 961 AGTACTGTTT TCCACGGCTG GATATCAATG TCAGCAAAGG AATCAATCAT CTACTGAAGA 1021 GCCCTTTTAG TGTTCATCCT AAAACAGGTC GCATATCTGT GCCTATTGAT TTGCAGAAAG 1081 TGGACCAGTT TGATCCATTT ACTGTTCCGA CCATAAGCTT CATCTGCCGT GAATTGGATG 1141 CCATTTCCAC TAATGAAGAG GAAAAAGAGG AGAATGAAGC TGAATCTGAT GTCAAACATA 1201 GAACCAGAGA TTATAAGAAG ACCAGTCTAG CACCTTATGT GAAAGTTTTT GAACATTTTC 1261 TTGAAAATCT GGATAAATCC CGAAAAGGAG AACTTCTTAA GAAGAGTGAT TTACAAAAAG 1321 ATTTCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1381 gttgcaacga ac