Construct: ORF ccsbBroadEn_01286

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016172.1_s300c1, BRDN0000398262
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAPK4 (5596)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5596 MAPK4 mitogen-activated protein k... NM_002747.4 100% 100%
2 human 5596 MAPK4 mitogen-activated protein k... XM_005258299.3 100% 100%
3 human 5596 MAPK4 mitogen-activated protein k... XM_011526074.2 100% 100%
4 human 5596 MAPK4 mitogen-activated protein k... XM_011526075.3 100% 100%
5 human 5596 MAPK4 mitogen-activated protein k... XM_011526076.2 100% 100%
6 human 5596 MAPK4 mitogen-activated protein k... XM_017025839.2 100% 100%
7 human 5596 MAPK4 mitogen-activated protein k... XM_011526077.2 69.7% 68.9% (many diffs)
8 human 5596 MAPK4 mitogen-activated protein k... NM_001292039.2 64% 64% 0_1ins633
9 human 5596 MAPK4 mitogen-activated protein k... XM_011526078.2 56.1% 51.2% (many diffs)
10 human 5596 MAPK4 mitogen-activated protein k... NM_001292040.2 39.5% 39.3% 693_694delTAinsGG;697_698insA;699_700ins1061
11 mouse 225724 Mapk4 mitogen-activated protein k... NM_172632.2 87.1% 93.5% (many diffs)
12 mouse 225724 Mapk4 mitogen-activated protein k... XM_006525900.3 87.1% 93.5% (many diffs)
13 mouse 225724 Mapk4 mitogen-activated protein k... XM_006525901.3 87.1% 93.5% (many diffs)
14 mouse 225724 Mapk4 mitogen-activated protein k... XM_017317891.1 59.9% 63.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1830
ORF length:
1761
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTGAGAAG GGTGACTGCA TCGCCAGTGT CTATGGGTAT GACCTCGGTG
121GGCGCTTTGT TGACTTCCAA CCCCTGGGCT TCGGTGTCAA TGGTTTGGTG CTGTCGGCCG
181TGGACAGCCG GGCCTGCCGG AAGGTCGCTG TGAAGAAGAT TGCCCTGAGC GATGCCCGCA
241GCATGAAGCA CGCGCTCCGA GAGATCAAGA TCATTCGGCG CCTGGACCAC GACAACATCG
301TCAAAGTGTA CGAGGTGCTC GGTCCCAAGG GCACTGACCT GCAGGGTGAG CTGTTCAAGT
361TCAGCGTGGC GTACATCGTC CAGGAGTACA TGGAGACCGA CCTGGCACGC CTGCTGGAGC
421AGGGCACGCT GGCAGAAGAG CATGCCAAGC TGTTCATGTA CCAGCTGCTC CGCGGGCTCA
481AGTACATCCA CTCCGCCAAC GTGCTGCACA GGGACCTGAA GCCCGCCAAC ATCTTCATCA
541GCACAGAGGA CCTCGTGCTC AAGATTGGGG ATTTCGGGTT GGCAAGGATC GTTGATCAGC
601ATTACTCCCA CAAGGGTTAT CTGTCAGAAG GGTTGGTAAC AAAGTGGTAC CGTTCCCCAC
661GACTGCTCCT TTCCCCCAAT AACTACACCA AAGCCATCGA CATGTGGGCC GCCGGCTGCA
721TCCTGGCTGA GATGCTTACG GGGAGAATGC TCTTTGCTGG GGCCCATGAG CTGGAGCAGA
781TGCAACTCAT CCTGGAGACC ATCCCTGTAA TCCGGGAGGA AGACAAGGAC GAGCTGCTCA
841GGGTGATGCC TTCCTTTGTC AGCAGCACCT GGGAGGTGAA GAGGCCTCTG CGCAAGCTGC
901TCCCTGAAGT GAACAGTGAA GCCATCGACT TTCTGGAGAA GATCCTGACC TTTAACCCCA
961TGGATCGCCT AACAGCTGAG ATGGGGCTGC AACACCCCTA CATGAGCCCA TACTCGTGCC
1021CTGAGGACGA GCCCACCTCA CAACACCCCT TCCGCATTGA GGATGAGATC GACGACATCG
1081TGCTGATGGC CGCTAACCAG AGCCAGCTGT CCAACTGGGA CACGTGCAGT TCCAGGTACC
1141CTGTGAGCCT GTCGTCGGAC CTGGAGTGGC GGCCTGACCG GTGCCAGGAC GCCAGCGAGG
1201TACAGCGCGA CCCGCGCGCG GGTTCGGCGC CACTGGCTGA GGACGTGCAG GTGGACCCGC
1261GCAAGGACTC GCACAGCAGC TCCGAGCGCT TCCTAGAGCA GTCGCACTCG TCCATGGAGC
1321GCGCCTTCGA GGCCGACTAC GGGCGCTCCT GCGACTACAA GGTGGGGTCG CCGTCCTACC
1381TGGACAAGCT GCTGTGGCGC GACAACAAGC CGCACCACTA CTCGGAGCCC AAGCTCATCC
1441TGGACCTGTC GCACTGGAAG CAGGCGGCCG GCGCGCCCCC CACGGCCACG GGGCTGGCGG
1501ACACGGGGGC GCGCGAGGAC GAGCCGGCCA GCCTCTTCCT GGAGATCGCG CAGTGGGTCA
1561AGAGCACGCA GGGCGGCCCA GAGCACGCCA GCCCGCCCGC CGACGACCCC GAGCGCCGCT
1621TGTCTGCCTC GCCCCCCGGC CGCCCGGCCC CGGTGGACGG CGGCGCCAGC CCCCAGTTCG
1681ACCTGGACGT GTTCATCTCC CGCGCCCTGA AGCTCTGCAC CAAGCCCGAG GACCTGCCGG
1741ACAATAAACT GGGCGACCTC AATGGTGCGT GCATCCCCGA GCACCCTGGC GACCTCGTGC
1801AGACCGAGGC CTTCTCCAAA GAAAGGTGGT TGCCAACTTT CTTGTACAAA GTtggcatta
1861taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)