Construct: ORF ccsbBroadEn_01399
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011545.1_s300c1, BRDN0000393180
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RLN1 (6013)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6013 | RLN1 | relaxin 1 | NM_006911.4 | 100% | 100% | |
| 2 | human | 6019 | RLN2 | relaxin 2 | NM_134441.3 | 90.4% | 82.1% | (many diffs) |
| 3 | human | 6013 | RLN1 | relaxin 1 | XM_024447637.1 | 81.6% | 73.5% | (many diffs) |
| 4 | human | 6019 | RLN2 | relaxin 2 | XM_024447646.1 | 81.6% | 73.5% | (many diffs) |
| 5 | human | 6019 | RLN2 | relaxin 2 | XM_024447647.1 | 81.6% | 73.5% | (many diffs) |
| 6 | human | 6013 | RLN1 | relaxin 1 | XM_024447638.1 | 77.1% | 70.2% | (many diffs) |
| 7 | human | 6013 | RLN1 | relaxin 1 | XM_017015007.1 | 70.2% | 61.6% | (many diffs) |
| 8 | human | 6013 | RLN1 | relaxin 1 | XM_017015008.1 | 66.1% | 63.6% | (many diffs) |
| 9 | human | 6013 | RLN1 | relaxin 1 | XM_017015009.1 | 55.7% | 41.5% | (many diffs) |
| 10 | human | 6013 | RLN1 | relaxin 1 | XM_024447642.1 | 53.5% | 53.5% | 0_1ins258 |
| 11 | human | 6013 | RLN1 | relaxin 1 | XM_024447643.1 | 53.5% | 53.5% | 0_1ins258 |
| 12 | human | 6013 | RLN1 | relaxin 1 | XM_024447644.1 | 53.5% | 53.5% | 0_1ins258 |
| 13 | human | 6013 | RLN1 | relaxin 1 | XM_024447645.1 | 53.5% | 53.5% | 0_1ins258 |
| 14 | human | 6013 | RLN1 | relaxin 1 | XM_017015010.1 | 50.9% | 39.2% | (many diffs) |
| 15 | human | 6019 | RLN2 | relaxin 2 | NM_001329191.1 | 46.9% | 41% | (many diffs) |
| 16 | human | 6013 | RLN1 | relaxin 1 | XM_024447639.1 | 46.9% | 41% | (many diffs) |
| 17 | human | 6013 | RLN1 | relaxin 1 | XM_024447640.1 | 46.9% | 41% | (many diffs) |
| 18 | human | 6013 | RLN1 | relaxin 1 | XM_024447641.1 | 46.9% | 41% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 621
- ORF length:
- 555
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TATAAAAAAG 61 TTGGCATGCC TCGCCTGTTC TTGTTCCACC TGCTAGAATT CTGTTTACTA CTGAACCAAT 121 TTTCCAGAGC AGTCGCGGCC AAATGGAAGG ACGATGTTAT TAAATTATGC GGCCGCGAAT 181 TAGTTCGCGC GCAGATTGCC ATTTGCGGCA TGAGCACCTG GAGCAAAAGG TCTCTGAGCC 241 AGGAAGATGC TCCTCAGACA CCTAGACCAG TGGCAGAAAT TGTACCATCC TTCATCAACA 301 AAGATACAGA AACTATAATT ATCATGTTGG AATTCATTGC TAATTTGCCA CCGGAGCTGA 361 AGGCAGCCCT ATCTGAGAGG CAACCATCAT TACCAGAGCT ACAGCAGTAT GTACCTGCAT 421 TAAAGGATTC CAATCTTAGC TTTGAAGAAT TTAAGAAACT TATTCGCAAT AGGCAAAGTG 481 AAGCCGCAGA CAGCAATCCT TCAGAATTAA AATACTTAGG CTTGGATACT CATTCTCAAA 541 AAAAGAGACG ACCCTACGTG GCACTGTTTG AGAAATGTTG CCTAATTGGT TGTACCAAAA 601 GGTCTCTTGC TAAATATTGC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 661 attgcttatc aatttgttgc aacgaac