Construct: ORF ccsbBroadEn_01470
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012764.1_s300c1, BRDN0000389636
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RXRG (6258)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6258 | RXRG | retinoid X receptor gamma | NM_006917.5 | 100% | 100% | |
| 2 | human | 6258 | RXRG | retinoid X receptor gamma | NM_001256570.1 | 73.4% | 73.4% | 0_1ins369 |
| 3 | human | 6258 | RXRG | retinoid X receptor gamma | NM_001256571.2 | 73.4% | 73.4% | 0_1ins369 |
| 4 | mouse | 20183 | Rxrg | retinoid X receptor gamma | NM_009107.3 | 90.2% | 98.2% | (many diffs) |
| 5 | mouse | 20183 | Rxrg | retinoid X receptor gamma | NM_001159731.1 | 66% | 72.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1455
- ORF length:
- 1389
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTA TGGAAATTAT TCTCACTTCA TGAAGTTTCC CGCAGGCTAT GGAGGCTCCC 121 CTGGCCACAC TGGCTCTACA TCCATGAGCC CATCAGCAGC CTTGTCCACA GGGAAGCCAA 181 TGGACAGCCA CCCCAGCTAC ACAGATACCC CAGTGAGTGC CCCACGGACT CTGAGTGCAG 241 TGGGGACCCC CCTCAATGCC CTGGGCTCTC CATATCGAGT CATCACCTCT GCCATGGGCC 301 CACCCTCAGG AGCACTTGCA GCGCCTCCAG GAATCAACTT GGTTGCCCCA CCCAGCTCTC 361 AGCTAAATGT GGTCAACAGT GTCAGCAGTT CAGAGGACAT CAAGCCCTTA CCAGGGCTTC 421 CCGGGATTGG AAACATGAAC TACCCATCCA CCAGCCCCGG ATCTCTGGTT AAACACATCT 481 GTGCCATCTG TGGAGACAGA TCCTCAGGAA AGCACTACGG GGTATACAGT TGTGAAGGCT 541 GCAAAGGGTT CTTCAAGAGG ACGATAAGGA AGGACCTCAT CTACACGTGT CGGGATAATA 601 AAGACTGCCT CATTGACAAG CGTCAGCGCA ACCGCTGCCA GTACTGTCGC TATCAGAAGT 661 GCCTTGTCAT GGGCATGAAG AGGGAAGCTG TGCAAGAAGA AAGACAGAGG AGCCGAGAGC 721 GAGCTGAGAG TGAGGCAGAA TGTGCTACCA GTGGTCATGA AGACATGCCT GTGGAGAGGA 781 TTCTAGAAGC TGAACTTGCT GTTGAACCAA AGACAGAATC CTATGGTGAC ATGAATATGG 841 AGAACTCGAC AAATGACCCT GTTACCAACA TATGTCATGC TGCTGACAAG CAGCTTTTCA 901 CCCTCGTTGA ATGGGCCAAG CGTATTCCCC ACTTCTCTGA CCTCACCTTG GAGGACCAGG 961 TCATTTTGCT TCGGGCAGGG TGGAATGAAT TGCTGATTGC CTCTTTCTCC CACCGCTCAG 1021 TTTCCGTGCA GGATGGCATC CTTCTGGCCA CGGGTTTACA TGTCCACCGG AGCAGTGCCC 1081 ACAGTGCTGG GGTCGGCTCC ATCTTTGACA GAGTCCTAAC TGAGCTGGTT TCCAAAATGA 1141 AAGACATGCA GATGGACAAG TCGGAACTGG GATGCCTGCG AGCCATTGTA CTCTTTAACC 1201 CAGATGCCAA GGGCCTGTCC AACCCCTCTG AGGTGGAGAC TCTGCGAGAG AAGGTTTATG 1261 CCACCCTTGA GGCCTACACC AAGCAGAAGT ATCCGGAACA GCCAGGCAGG TTTGCCAAGC 1321 TGCTGCTGCG CCTCCCAGCT CTGCGTTCCA TTGGCTTGAA ATGCCTGGAG CACCTCTTCT 1381 TCTTCAAGCT CATCGGGGAC ACCCCCATTG ACACCTTCCT CATGGAGATG TTGGAGACCC 1441 CGCTGCAGAT CACCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1501 tatcaatttg ttgcaacgaa c