Construct: ORF ccsbBroadEn_01531
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007140.1_s300c1, BRDN0000385378
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SHC1 (6464)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6464 | SHC1 | SHC adaptor protein 1 | NM_003029.5 | 100% | 100% | |
| 2 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_024449083.1 | 100% | 100% | |
| 3 | human | 6464 | SHC1 | SHC adaptor protein 1 | NM_001130041.2 | 99.7% | 99.7% | 919_920insCAG |
| 4 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_024449084.1 | 99.7% | 99.7% | 919_920insCAG |
| 5 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_017002083.1 | 95.9% | 95.9% | 419_420ins54;865_866insCAG |
| 6 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_011509897.1 | 94.4% | 94.4% | 419_420ins54;597_623del |
| 7 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_005245451.4 | 91.5% | 86.8% | (many diffs) |
| 8 | human | 6464 | SHC1 | SHC adaptor protein 1 | NM_001202859.2 | 90.2% | 90.2% | 0_1ins135;784_785insCAG |
| 9 | human | 6464 | SHC1 | SHC adaptor protein 1 | NM_001130040.2 | 81.1% | 81.1% | 1_330del |
| 10 | human | 6464 | SHC1 | SHC adaptor protein 1 | NM_183001.5 | 80.9% | 80.9% | 1_330del;1249_1250insCAG |
| 11 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_011509898.2 | 80.3% | 75.7% | (many diffs) |
| 12 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_011509892.3 | 79.9% | 79.9% | 1_330del;981_1007del |
| 13 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_011509893.3 | 79.7% | 79.7% | 1_330del;981_1007del;1276_1277insCAG |
| 14 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_017002081.2 | 78% | 78% | 1_330del;749_750ins54 |
| 15 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_017002082.2 | 77.9% | 77.9% | 1_330del;749_750ins54;1195_1196insCAG |
| 16 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_011509894.3 | 76.8% | 76.8% | 1_330del;749_750ins54;927_953del |
| 17 | human | 6464 | SHC1 | SHC adaptor protein 1 | XM_005245449.5 | 75% | 71.3% | (many diffs) |
| 18 | mouse | 20416 | Shc1 | src homology 2 domain-conta... | NM_011368.5 | 89.6% | 95.1% | (many diffs) |
| 19 | mouse | 20416 | Shc1 | src homology 2 domain-conta... | XM_006501212.3 | 78.3% | 83.3% | (many diffs) |
| 20 | mouse | 20416 | Shc1 | src homology 2 domain-conta... | XM_006501213.2 | 78.3% | 83.3% | (many diffs) |
| 21 | mouse | 20416 | Shc1 | src homology 2 domain-conta... | NM_001113331.2 | 72.8% | 77.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1488
- ORF length:
- 1422
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CAAGCTGAGT GGAGGCGGCG GGCGCAGGAC TCGGGTGGAA GGGGGCCAGC 121 TTGGGGGCGA GGAGTGGACC CGCCACGGGA GCTTTGTCAA TAAGCCCACG CGGGGCTGGC 181 TGCATCCCAA CGACAAAGTC ATGGGACCCG GGGTTTCCTA CTTGGTTCGG TACATGGGTT 241 GTGTGGAGGT CCTCCAGTCA ATGCGTGCCC TGGACTTCAA CACCCGGACT CAGGTCACCA 301 GGGAGGCCAT CAGTCTGGTG TGTGAGGCTG TGCCGGGTGC TAAGGGGGCG ACAAGGAGGA 361 GAAAGCCCTG TAGCCGCCCG CTCAGCTCTA TCCTGGGGAG GAGTAACCTG AAATTTGCTG 421 GAATGCCAAT CACTCTCACC GTCTCCACCA GCAGCCTCAA CCTCATGGCC GCAGACTGCA 481 AACAGATCAT CGCCAACCAC CACATGCAAT CTATCTCATT TGCATCCGGC GGGGATCCGG 541 ACACAGCCGA GTATGTCGCC TATGTTGCCA AAGACCCTGT GAATCAGAGA GCCTGCCACA 601 TTCTGGAGTG TCCCGAAGGG CTTGCCCAGG ATGTCATCAG CACCATTGGC CAGGCCTTCG 661 AGTTGCGCTT CAAACAATAC CTCAGGAACC CACCCAAACT GGTCACCCCT CATGACAGGA 721 TGGCTGGCTT TGATGGCTCA GCATGGGATG AGGAGGAGGA AGAGCCACCT GACCATCAGT 781 ACTATAATGA CTTCCCGGGG AAGGAACCCC CCTTGGGGGG GGTGGTAGAC ATGAGGCTTC 841 GGGAAGGAGC CGCTCCAGGG GCTGCTCGAC CCACTGCACC CAATGCCCAG ACCCCCAGCC 901 ACTTGGGAGC TACATTGCCT GTAGGACAGC CTGTTGGGGG AGATCCAGAA GTCCGCAAAC 961 AGATGCCACC TCCACCACCC TGTCCAGCAG GCAGAGAGCT TTTTGATGAT CCCTCCTATG 1021 TCAACGTCCA GAACCTAGAC AAGGCCCGGC AAGCAGTGGG TGGTGCTGGG CCCCCCAATC 1081 CTGCTATCAA TGGCAGTGCA CCCCGGGACC TGTTTGACAT GAAGCCCTTC GAAGATGCTC 1141 TTCGCGTGCC TCCACCTCCC CAGTCGGTGT CCATGGCTGA GCAGCTCCGA GGGGAGCCCT 1201 GGTTCCATGG GAAGCTGAGC CGGCGGGAGG CTGAGGCACT GCTGCAGCTC AATGGGGACT 1261 TCCTGGTACG GGAGAGCACG ACCACACCTG GCCAGTATGT GCTCACTGGC TTGCAGAGTG 1321 GGCAGCCTAA GCATTTGCTA CTGGTGGACC CTGAGGGTGT GGTTCGGACT AAGGATCACC 1381 GCTTTGAAAG TGTCAGTCAC CTTATCAGCT ACCACATGGA CAATCACTTG CCCATCATCT 1441 CTGCGGGCAG CGAACTGTGT CTACAGCAAC CTGTGGAGCG GAAACTGTGC CCAACTTTCT 1501 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac