Construct: ORF ccsbBroadEn_01552
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000956.1_s300c1, BRDN0000456721
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLCO2A1 (6578)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6578 | SLCO2A1 | solute carrier organic anio... | NM_005630.3 | 100% | 100% | |
| 2 | human | 6578 | SLCO2A1 | solute carrier organic anio... | XM_024453721.1 | 89.1% | 87.6% | (many diffs) |
| 3 | human | 6578 | SLCO2A1 | solute carrier organic anio... | XM_017007077.1 | 73.8% | 73.8% | 0_1ins504 |
| 4 | mouse | 24059 | Slco2a1 | solute carrier organic anio... | NM_033314.3 | 84.6% | 83% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1995
- ORF length:
- 1929
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GCTCCTGCCC AAGCTCGGCG CGTCCCAGGG CAGCGACACC TCTACTAGCC 121 GAGCCGGCCG CTGTGCCCGC TCGGTCTTCG GCAACATTAA GGTGTTTGTG CTCTGCCAAG 181 GCCTCCTGCA GCTCTGCCAA CTCCTGTACA GCGCCTACTT CAAGAGCAGC CTCACCACCA 241 TTGAGAAGCG CTTTGGGCTC TCCAGTTCTT CATCGGGTCT CATTTCCAGC TTGAATGAGA 301 TCAGCAATGC CATCCTCATC ATCTTTGTCA GCTACTTTGG CAGCCGGGTG CACCGTCCAC 361 GTCTGATTGG CATCGGAGGT CTCTTCCTGG CTGCAGGTGC CTTCATCCTC ACCCTCCCAC 421 ACTTCCTCTC CGAGCCCTAC CAGTACACCT TGGCCAGCAC TGGGAACAAC AGCCGCTTGC 481 AGGCCGAGCT CTGCCAGAAG CATTGGCAGG ACCTGCCTCC CAGTAAGTGC CACAGCACCA 541 CCCAGAACCC CCAGAAGGAG ACCAGCAGCA TGTGGGGCCT GATGGTGGTT GCCCAGCTGC 601 TGGCTGGCAT CGGGACAGTG CCTATTCAGC CATTTGGGAT CTCCTATGTG GATGACTTCT 661 CAGAGCCCAG CAACTCGCCC CTGTACATCT CCATCTTATT TGCCATCTCT GTATTTGGAC 721 CGGCTTTCGG GTACCTGCTG GGCTCTGTCA TGCTGCAGAT CTTTGTGGAC TATGGCAGGG 781 TCAACACAGC TGCAGTTAAC TTGGTCCCGG GTGACCCCCG ATGGATTGGA GCCTGGTGGC 841 TAGGCCTGCT CATTTCTTCA GCTTTATTGG TTCTCACCTC TTTCCCCTTT TTTTTCTTCC 901 CTCGAGCAAT GCCCATAGGA GCAAAGAGGG CTCCTGCCAC AGCAGATGAA GCAAGGAAGT 961 TGGAGGAGGC CAAGTCAAGA GGCTCCCTGG TGGATTTCAT TAAACGGTTT CCATGCATCT 1021 TTCTGAGGCT CCTGATGAAC TCACTCTTCG TCCTGGTGGT CCTGGCCCAG TGCACCTTCT 1081 CCTCCGTCAT TGCTGGCCTC TCCACCTTCC TCAACAAGTT CCTGGAGAAG CAGTATGGCA 1141 CCTCAGCAGC CTATGCCAAC TTCCTCATTG GTGCTGTGAA CCTCCCTGCT GCAGCCTTGG 1201 GGATGCTGTT TGGAGGAATC CTCATGAAGC GCTTTGTTTT CTCTCTACAA GCCATTCCCC 1261 GCATAGCTAC CACCATCATC ACCATCTCCA TGATCCTTTG TGTTCCTTTG TTCTTCATGG 1321 GATGCTCCAC CCCAACTGTG GCCGAAGTCT ACCCCCCTAG CACATCAAGT TCTATACATC 1381 CGCAGTCTCC TGCCTGCCGC AGGGACTGCT CGTGCCCAGA TTCTATCTTC CACCCGGTCT 1441 GTGGAGACAA TGGAATCGAG TACCTCTCCC CTTGCCATGC CGGCTGCAGC AACATCAACA 1501 TGAGCTCTGC AACCTCCAAG CAACTGATCT ATTTGAACTG CAGCTGTGTG ACCGGGGGAT 1561 CCGCTTCAGC AAAGACAGGA TCGTGCCCTG TCCCCTGTGC CCACTTCCTG CTCCCGGCCA 1621 TCTTCCTCAT CTCCTTCGTG TCCCTGATAG CCTGCATCTC CCACAACCCC CTCTACATGA 1681 TGGTTCTGCG TGTGGTGAAC CAGGAGGAAA AGTCATTTGC CATCGGGGTG CAGTTCTTGT 1741 TGATGCGCTT GCTGGCCTGG CTGCCATCTC CAGCCCTCTA TGGCCTCACC ATTGACCACT 1801 CCTGCATCCG GTGGAACTCG CTGTGCTTGG GGAGGCGAGG GGCCTGCGCC TACTATGACA 1861 ACGATGCTCT CCGAGACAGG TACCTGGGCC TGCAGATGGG CTACAAGGCG CTGGGCATGC 1921 TGCTGCTTTG CTTCATCAGC TGGAGGGTGA AGAAGAACAA GGAGTACAAC GTGCAGAAGG 1981 CGGCAGGCCT CATCTGCCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct 2041 tatcaatttg ttgcaacgaa c