Transcript: Human NM_005630.3

Homo sapiens solute carrier organic anion transporter family member 2A1 (SLCO2A1), mRNA.

Source:
NCBI, updated 2019-08-26
Taxon:
Homo sapiens (human)
Gene:
SLCO2A1 (6578)
Length:
4067
CDS:
124..2055

Additional Resources:

NCBI RefSeq record:
NM_005630.3
NBCI Gene record:
SLCO2A1 (6578)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005630.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043067 GTGGATTTCATTAAACGGTTT pLKO.1 1048 CDS 100% 4.050 5.670 N SLCO2A1 n/a
2 TRCN0000043064 CCTCCAAGCAACTGATCTATT pLKO.1 1571 CDS 100% 13.200 10.560 N SLCO2A1 n/a
3 TRCN0000425823 CTGTACATCTCCATCTTATTT pLKO_005 739 CDS 100% 15.000 10.500 N SLCO2A1 n/a
4 TRCN0000438303 CATCGGGACAGTGCCTATTCA pLKO_005 666 CDS 100% 5.625 3.938 N SLCO2A1 n/a
5 TRCN0000043063 CCCTAGCACATCAAGTTCTAT pLKO.1 1413 CDS 100% 5.625 3.938 N SLCO2A1 n/a
6 TRCN0000043066 CAGTTCTTCATCGGGTCTCAT pLKO.1 321 CDS 100% 4.950 3.465 N SLCO2A1 n/a
7 TRCN0000043065 CCTGCTCATTTCTTCAGCTTT pLKO.1 903 CDS 100% 4.950 3.465 N SLCO2A1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005630.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01552 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01552 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479346 GCACATAGCTTGCCCCGAACTAGC pLX_317 22.6% 100% 100% V5 n/a
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