Construct: ORF ccsbBroadEn_01583

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003629.1_s300c1, BRDN0000387779
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SP4 (6671)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6671 SP4 Sp4 transcription factor NM_003112.5 100% 100%
2 human 6671 SP4 Sp4 transcription factor NM_001326542.2 97.8% 97.8% 0_1ins51
3 human 6671 SP4 Sp4 transcription factor XM_011515486.2 90.6% 90.1% (many diffs)
4 human 6671 SP4 Sp4 transcription factor XM_005249829.4 89.8% 89.5% (many diffs)
5 human 6671 SP4 Sp4 transcription factor XM_017012557.1 83% 80.7% (many diffs)
6 human 6671 SP4 Sp4 transcription factor XM_011515487.2 72.5% 71.1% (many diffs)
7 human 6671 SP4 Sp4 transcription factor NM_001326543.2 60% 60% 0_1ins939
8 mouse 20688 Sp4 trans-acting transcription ... NM_009239.4 92.6% 97.4% (many diffs)
9 mouse 20688 Sp4 trans-acting transcription ... NM_001166385.2 92.4% 97.1% (many diffs)
10 mouse 20688 Sp4 trans-acting transcription ... XM_017315007.1 90.6% 95.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2421
ORF length:
2352
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGCGATCAG AAGAAGGAGG AGGAGGAGGA GGCGGCAGCG GCAGCGGCGA
121TGGCTACAGA AGGAGGGAAA ACCTCTGAGC CAGAGAATAA CAATAAAAAA CCCAAAACCT
181CAGGCTCCCA GGACTCTCAG CCCTCTCCTC TGGCTTTACT GGCAGCTACT TGCAGCAAAA
241TAGGGACTCC TGGTGAAAAT CAAGCAACTG GACAACAACA AATTATTATA GATCCAAGTC
301AAGGATTGGT GCAACTTCAA AATCAACCAC AACAGCTAGA ACTGGTAACA ACGCAACTTG
361CTGGAAACGC TTGGCAACTT GTTGCCTCCA CTCCTCCTGC TTCAAAAGAG AATAACGTTT
421CTCAACCAGC CTCTAGTTCG TCTAGTTCTT CCAGCAGTAA TAACGGGAGT GCATCTCCTA
481CAAAAACTAA ATCAGGTAAT TCTTCCACCC CTGGTCAATT TCAAGTCATA CAAGTACAAA
541ATCCAAGTGG TAGTGTACAG TACCAAGTAA TTCCACAACT TCAGACAGTG GAAGGTCAAC
601AAATTCAAAT CAATCCAACT AGTAGTTCAT CTCTACAGGA TTTGCAGGGT CAAATTCAGC
661TCATTTCTGC AGGTAATAAT CAAGCTATAC TCACAGCTGC TAACAGGACA GCTTCTGGGA
721ATATTCTTGC TCAAAACCTG GCAAATCAGA CAGTTCCGGT CCAAATTAGA CCTGGTGTTT
781CAATACCACT GCAGTTACAG ACTCTTCCTG GTACTCAGGC TCAAGTTGTA ACAACCCTAC
841CAATTAACAT TGGAGGAGTG ACTCTAGCTT TGCCAGTGAT AAACAACGTG GCTGCCGGAG
901GAGGGACTGG GCAGGTTGGC CAGCCTGCTG CTACTGCTGA TAGTGGGACT TCCAATGGGA
961ATCAATTAGT TTCCACACCC ACCAACACCA CTACTTCTGC CAGTACTATG CCAGAATCTC
1021CCTCCTCCTC CACTACCTGC ACAACCACTG CTTCAACGTC TTTGACAAGC AGTGACACAT
1081TAGTGAGCTC AGCAGATACT GGCCAGTATG CAAGCACATC AGCCAGTAGT TCTGAACGCA
1141CCATTGAAGA ATCTCAAACA CCTGCTGCTA CTGAGTCTGA AGCCCAGAGC TCCAGTCAGC
1201TTCAGCCTAA TGGAATGCAG AATGCACAGG ATCAATCAAA TTCTCTTCAG CAGGTGCAAA
1261TTGTAGGCCA ACCTATCTTA CAGCAGATCC AGATCCAACA GCCTCAGCAA CAGATCATTC
1321AGGCTATTCC ACCACAGTCG TTTCAACTCC AGTCAGGGCA GACGATTCAG ACCATCCAGC
1381AGCAGCCTTT ACAGAATGTT CAACTTCAAG CAGTAAATCC GACTCAGGTG CTTATCAGGG
1441CTCCAACTTT AACACCTTCA GGGCAAATCA GTTGGCAAAC TGTACAGGTT CAGAATATTC
1501AGAGTCTTTC AAATTTGCAA GTTCAGAATG CTGGGTTATC CCAACAATTA ACCATCACCC
1561CAGTGTCTTC AAGTGGTGGC ACAACTCTTG CTCAGATTGC TCCTGTGGCT GTTGCTGGTG
1621CCCCAATAAC TTTGAATACT GCCCAGCTTG CATCAGTGCC TAACCTTCAG ACAGTGAGCG
1681TTGCCAACCT GGGTGCTGCA GGTGTTCAAG TGCAGGGAGT TCCCGTTACA ATCACTAGTG
1741TTGCAGGTCA GCAGCAAGGA CAAGATGGAG TAAAAGTCCA GCAAGCTACT ATAGCTCCTG
1801TAACTGTAGC AGTTGGAGGA ATTGCTAATG CCACGATAGG TGCTGTTAGT CCTGACCAAC
1861TCACACAAGT GCATTTGCAG CAAGGCCAGC AGACTTCTGA TCAAGAGGTA CAACCTGGCA
1921AGAGGCTTCG AAGAGTTGCC TGTTCCTGTC CTAATTGTAG GGAAGGAGAA GGAAGAGGCA
1981GTAATGAACC AGGAAAAAAG AAGCAGCATA TCTGTCATAT TGAAGGATGT GGTAAAGTTT
2041ATGGCAAAAC ATCTCATTTA CGAGCACATC TTCGCTGGCA TACTGGAGAA AGACCTTTTA
2101TATGCAACTG GATGTTTTGT GGCAAAAGAT TCACACGGAG TGATGAGCTC CAGAGACATA
2161GAAGAACCCA TACAGGTGAA AAGAGATTTG AATGCCCGGA ATGTTCTAAA AGGTTTATGC
2221GGAGTGATCA TCTCTCCAAA CATGTCAAAA CGCACCAGAA TAAAAAAGGT GGTGGGACAG
2281CTCTTGCCAT TGTTACCTCG GGAGAACTGG ACTCATCTGT TACAGAGGTG CTTGGCTCCC
2341CAAGAATTGT CACAGTTGCA GCCATTTCTC AAGATTCGAA TCCAGCAACT CCCAATGTTT
2401CAACCAACAT GGAAGAATTC TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2461attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)