Construct: ORF ccsbBroadEn_01698
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005286.1_s300c1, BRDN0000391910
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TPD52L1 (7164)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_001003396.3 | 100% | 100% | |
| 2 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_001003397.3 | 90.9% | 90.9% | 381_382ins39 |
| 3 | human | 7164 | TPD52L1 | TPD52 like 1 | XM_006715557.4 | 85.6% | 85.5% | 425_426insAC;429_498delinsAG |
| 4 | human | 7164 | TPD52L1 | TPD52 like 1 | XM_017011238.2 | 84.1% | 77.8% | (many diffs) |
| 5 | human | 7164 | TPD52L1 | TPD52 like 1 | XM_024446534.1 | 80.7% | 80.6% | 425_426insAC;429_528delinsAG |
| 6 | human | 7164 | TPD52L1 | TPD52 like 1 | XM_017011239.1 | 79.8% | 79.8% | 0_1ins87 |
| 7 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_001292026.3 | 70.8% | 70.8% | 0_1ins87;294_295ins39 |
| 8 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_001318907.2 | 70.8% | 70.8% | 0_1ins87;294_295ins39 |
| 9 | human | 7164 | TPD52L1 | TPD52 like 1 | XM_017011240.1 | 70.8% | 70.8% | 0_1ins87;294_295ins39 |
| 10 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_001300994.3 | 70.8% | 68.5% | (many diffs) |
| 11 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_003287.4 | 69.7% | 69.6% | 425_426insAC;429_612delinsAG |
| 12 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_001318903.2 | 68% | 67.4% | 386_400del;440_441insAC;444_627delinsAG |
| 13 | human | 7164 | TPD52L1 | TPD52 like 1 | NM_001003395.3 | 55.5% | 55.3% | 0_1ins87;338_339insAC;342_525delinsAG |
| 14 | human | 7164 | TPD52L1 | TPD52 like 1 | XM_005267122.2 | 55.5% | 55.3% | 0_1ins87;338_339insAC;342_525delinsAG |
| 15 | human | 7164 | TPD52L1 | TPD52 like 1 | XR_001743601.2 | 13.7% | (many diffs) | |
| 16 | mouse | 21987 | Tpd52l1 | tumor protein D52-like 1 | NM_009413.1 | 62.7% | 66.1% | (many diffs) |
| 17 | mouse | 21987 | Tpd52l1 | tumor protein D52-like 1 | XM_006512704.3 | 46.8% | 49.4% | (many diffs) |
| 18 | mouse | 21987 | Tpd52l1 | tumor protein D52-like 1 | XM_006512705.3 | 42.5% | 45.1% | (many diffs) |
| 19 | mouse | 21987 | Tpd52l1 | tumor protein D52-like 1 | XM_011243166.2 | 38.6% | 38.5% | (many diffs) |
| 20 | mouse | 21987 | Tpd52l1 | tumor protein D52-like 1 | XM_006512703.3 | 37.4% | 39.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 498
- ORF length:
- 432
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGCGCAGGCA CAAGGTTTGT TGGAGACTGA ACCGTTGCAA GGAACAGACG 121 AAGATGCAGT AGCCAGTGCT GACTTCTCTA GCATGCTCTC TGAGGAGGAA AAGGAAGAGT 181 TAAAAGCAGA GTTAGTTCAG CTAGAAGACG AAATTACAAC ACTACGACAA GTTTTGTCAG 241 CGAAAGAAAG GCATCTAGTT GAGATAAAAC AAAAACTCGG CATGAACCTG ATGAATGAAT 301 TAAAACAGAA CTTCAGCAAA AGCTGGCATG ACATGCAGAC TACCACTGCC TACAAGAAAA 361 CACATGAAAC CCTGAGTCAC GCAGGGCAAA AGGCAACTGC AGCTTTCAGC AACGTTGGAA 421 CGGCCATCAG CAAGAAGTTC GGAGACATGA GTTACTCCAT TCGCCATTCC ATAAGTATGC 481 CTGCTATGAG ACGAAAGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 541 gcttatcaat ttgttgcaac gaac