Construct: ORF ccsbBroadEn_01773

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013546.1_s300c1, BRDN0000385278
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VIPR2 (7434)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7434 VIPR2 vasoactive intestinal pepti... NM_003382.5 99.9% 100% 393A>C
2 human 7434 VIPR2 vasoactive intestinal pepti... XM_005249561.3 92.9% 91% (many diffs)
3 human 7434 VIPR2 vasoactive intestinal pepti... XM_006716107.2 89.2% 87% (many diffs)
4 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446914.1 85% 74.6% 0_1ins71;188_333del;468A>C
5 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446915.1 85% 74.6% 0_1ins71;188_333del;468A>C
6 human 7434 VIPR2 vasoactive intestinal pepti... NM_001308259.1 83.3% 76.5% (many diffs)
7 human 7434 VIPR2 vasoactive intestinal pepti... NM_001304522.1 81.7% 81.7% 356_357ins240
8 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446917.1 81.4% 80% (many diffs)
9 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446916.1 79.5% 78.6% (many diffs)
10 human 7434 VIPR2 vasoactive intestinal pepti... XM_011516550.2 74% 65.1% (many diffs)
11 human 7434 VIPR2 vasoactive intestinal pepti... XM_006716108.3 72% 68.4% (many diffs)
12 human 7434 VIPR2 vasoactive intestinal pepti... XM_017012580.1 68.4% 68.4% 0_1ins414
13 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446918.1 68.4% 68.4% 0_1ins414
14 human 7434 VIPR2 vasoactive intestinal pepti... NR_130758.1 30.7% 1_186del;1330_1663del;1835_4278del
15 mouse 22355 Vipr2 vasoactive intestinal pepti... NM_009511.2 81.6% 85.2% (many diffs)
16 mouse 22355 Vipr2 vasoactive intestinal pepti... XM_006515805.1 79.1% 82% (many diffs)
17 mouse 22355 Vipr2 vasoactive intestinal pepti... XM_011244102.1 75.1% 72.9% (many diffs)
18 mouse 22355 Vipr2 vasoactive intestinal pepti... XM_006515806.3 72.5% 75.9% (many diffs)
19 mouse 22355 Vipr2 vasoactive intestinal pepti... XM_017315044.1 49.9% 52.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1380
ORF length:
1314
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGACATGCG GACGCTGCTG CCTCCCGCGC TGCTGACCTG CTGGCTGCTC GCCCCCGTGA
121ACAGCATTCA CCCAGAATGC CGATTTCATC TGGAAATACA GGAGGAAGAA ACAAAATGTG
181CAGAGCTTCT GAGGTCTCAA ACAGAAAAAC ACAAAGCCTG CAGTGGCGTC TGGGACAACA
241TCACGTGCTG GCGGCCTGCC AATGTGGGAG AGACCGTCAC GGTGCCCTGC CCAAAAGTCT
301TCAGCAATTT TTACAGCAAA GCAGGAAACA TAAGCAAAAA CTGTACGAGT GACGGATGGT
361CAGAGACGTT CCCAGATTTC GTCGATGCCT GTGGCTACAG CGACCCGGAG GATGAGAGCA
421AGATCACGTT TTATATTCTG GTGAAGGCCA TTTATACCCT GGGCTACAGT GTCTCTCTGA
481TGTCTCTTGC AACAGGAAGC ATAATTCTGT GCCTCTTCAG GAAGCTGCAC TGCACCAGGA
541ATTACATCCA CCTGAACCTG TTCCTGTCCT TCATCCTGAG AGCCATCTCA GTGCTGGTCA
601AGGACGACGT TCTCTACTCC AGCTCTGGCA CGTTGCACTG CCCTGACCAG CCATCCTCCT
661GGGTGGGCTG CAAGCTGAGC CTGGTCTTCC TGCAGTACTG CATCATGGCC AACTTCTTCT
721GGCTGCTGGT GGAGGGGCTC TACCTCCACA CCCTCCTGGT GGCCATGCTC CCCCCTAGAA
781GGTGCTTCCT GGCCTACCTC CTGATCGGAT GGGGCCTCCC CACCGTCTGC ATCGGTGCAT
841GGACTGCGGC CAGGCTCTAC TTAGAAGACA CCGGTTGCTG GGATACAAAC GACCACAGTG
901TGCCCTGGTG GGTCATACGA ATACCGATTT TAATTTCCAT CATCGTCAAT TTTGTCCTTT
961TCATTAGTAT TATACGAATT TTGCTGCAGA AGTTAACATC CCCAGATGTC GGCGGCAACG
1021ACCAGTCTCA GTACAAGAGG CTGGCCAAGT CCACGCTCCT GCTTATCCCG CTGTTCGGCG
1081TCCACTACAT GGTGTTTGCC GTGTTTCCCA TCAGCATCTC CTCCAAATAC CAGATACTGT
1141TTGAGCTGTG CCTCGGGTCG TTCCAGGGCC TGGTGGTGGC CGTCCTCTAC TGTTTCCTGA
1201ACAGTGAGGT GCAGTGCGAG CTGAAGCGAA AATGGCGAAG CCGGTGCCCG ACCCCGTCCG
1261CGAGCCGGGA TTACAGGGTC TGCGGTTCCT CCTTCTCCCG CAACGGCTCG GAGGGCGCCC
1321TGCAGTTCCA CCGCGGCTCC CGCGCCCAGT CCTTCCTGCA AACGGAGACC TCGGTCATCA
1381ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1441acgaac

Download FASTA (ORF) (Full)

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