Transcript: Mouse NM_009511.2

Mus musculus vasoactive intestinal peptide receptor 2 (Vipr2), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Vipr2 (22355)
Length:
3403
CDS:
121..1434

Additional Resources:

NCBI RefSeq record:
NM_009511.2
NBCI Gene record:
Vipr2 (22355)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009511.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000027774 CCTGGTGGTAGCAGTTCTATA pLKO.1 1221 CDS 100% 13.200 18.480 N Vipr2 n/a
2 TRCN0000027845 CGCTTTCATCTAGAAATACAA pLKO.1 193 CDS 100% 5.625 7.875 N Vipr2 n/a
3 TRCN0000027800 CCTTCCCTATTGGCATCTCAT pLKO.1 1154 CDS 100% 4.950 3.960 N Vipr2 n/a
4 TRCN0000027821 CCCTCTTCATCAGCATTGTAA pLKO.1 1007 CDS 100% 5.625 3.938 N Vipr2 n/a
5 TRCN0000027822 GCAGTCAGAGACTTCAGTCAT pLKO.1 1410 CDS 100% 4.950 3.465 N Vipr2 n/a
6 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2460 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009511.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01773 pDONR223 100% 81.6% 85.2% None (many diffs) n/a
2 ccsbBroad304_01773 pLX_304 0% 81.6% 85.2% V5 (many diffs) n/a
3 TRCN0000468787 GTTCCTGTATACCGGATCGGATGC pLX_317 35.8% 81.6% 85.2% V5 (many diffs) n/a
4 TRCN0000488433 GCATCAACGCTTATCGTCCCCCTG pLX_317 28.5% 81.6% 85.2% V5 (not translated due to prior stop codon) (many diffs) n/a
5 TRCN0000488785 AACGCGACCCGCAAATTTGATTCC pLX_317 28.4% 81.5% 85% V5 (many diffs) n/a
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