Transcript: Human XM_006716107.2

PREDICTED: Homo sapiens vasoactive intestinal peptide receptor 2 (VIPR2), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
VIPR2 (7434)
Length:
2350
CDS:
187..1554

Additional Resources:

NCBI RefSeq record:
XM_006716107.2
NBCI Gene record:
VIPR2 (7434)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006716107.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000014225 GTGGGTCATACGAATACCGAT pLKO.1 1029 CDS 100% 2.640 3.696 N VIPR2 n/a
2 TRCN0000358233 ACCGGTTGCTGGGATACAAAC pLKO_005 991 CDS 100% 10.800 8.640 N VIPR2 n/a
3 TRCN0000014227 TGCCGATTTCATCTGGAAATA pLKO.1 259 CDS 100% 1.320 1.056 N VIPR2 n/a
4 TRCN0000358232 CTTGCAACAGGAAGCATAATT pLKO_005 607 CDS 100% 15.000 10.500 N VIPR2 n/a
5 TRCN0000014226 CAACGACCAGTCTCAGTACAA pLKO.1 1137 CDS 100% 4.950 3.465 N VIPR2 n/a
6 TRCN0000014224 GATGAGAGCAAGATCACGTTT pLKO.1 532 CDS 100% 4.950 3.465 N VIPR2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006716107.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488785 AACGCGACCCGCAAATTTGATTCC pLX_317 28.4% 89.8% 87% V5 (many diffs) n/a
2 ccsbBroadEn_01773 pDONR223 100% 89.2% 87% None (many diffs) n/a
3 ccsbBroad304_01773 pLX_304 0% 89.2% 87% V5 (many diffs) n/a
4 TRCN0000468787 GTTCCTGTATACCGGATCGGATGC pLX_317 35.8% 89.2% 87% V5 (many diffs) n/a
5 TRCN0000488433 GCATCAACGCTTATCGTCCCCCTG pLX_317 28.5% 89.2% 87% V5 (not translated due to prior stop codon) (many diffs) n/a
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