Construct: ORF ccsbBroadEn_01799

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007619.1_s300c1, BRDN0000394338
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZKSCAN1 (7586)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7586 ZKSCAN1 zinc finger with KRAB and S... NM_001346581.2 100% 100%
2 human 7586 ZKSCAN1 zinc finger with KRAB and S... NM_003439.4 100% 100%
3 human 7586 ZKSCAN1 zinc finger with KRAB and S... XM_011516559.3 100% 100%
4 human 7586 ZKSCAN1 zinc finger with KRAB and S... NM_001287054.3 93.6% 93.6% 0_1ins108
5 human 7586 ZKSCAN1 zinc finger with KRAB and S... NM_001346580.2 93.6% 93.6% 0_1ins108
6 human 7586 ZKSCAN1 zinc finger with KRAB and S... NM_001287055.2 62.1% 62.1% 0_1ins639
7 human 7586 ZKSCAN1 zinc finger with KRAB and S... NM_001346579.1 51.5% 43.8% (many diffs)
8 human 7586 ZKSCAN1 zinc finger with KRAB and S... NR_144477.2 17.4% 1_219del;1019_1268del;2159_9653del
9 human 7586 ZKSCAN1 zinc finger with KRAB and S... XR_927529.2 16.6% 1_234del;1034_1758del;2649_10143del
10 human 7586 ZKSCAN1 zinc finger with KRAB and S... XR_002956485.1 16.1% (many diffs)
11 mouse 74570 Zkscan1 zinc finger with KRAB and S... NM_133906.4 85.5% 89.7% (many diffs)
12 mouse 74570 Zkscan1 zinc finger with KRAB and S... NM_029869.1 74.3% 78.5% (many diffs)
13 mouse 74570 Zkscan1 zinc finger with KRAB and S... XM_006504628.3 74.3% 78.5% (many diffs)
14 mouse 74570 Zkscan1 zinc finger with KRAB and S... XM_011240958.2 53.1% 54.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1758
ORF length:
1689
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GATGACTGCT GAATCACGGG AAGCCACGGG TCTGTCCCCA CAGGCTGCAC
121AGGAGAAGGA TGGTATCGTA ATAGTGAAGG TGGAAGAGGA AGATGAGGAA GACCACATGT
181GGGGGCAGGA TTCCACCCTA CAGGACACGC CTCCTCCAGA CCCAGAGATA TTCCGCCAAC
241GCTTCAGGCG CTTCTGTTAC CAGAACACTT TTGGGCCCCG AGAGGCTCTC AGTCGGCTGA
301AGGAACTTTG TCATCAGTGG CTGCGGCCAG AAATAAACAC CAAGGAACAG ATCCTGGAGC
361TTCTGGTGCT AGAGCAGTTT CTTTCCATCC TGCCCAAGGA GCTCCAGGTC TGGCTGCAGG
421AATACCGCCC CGATAGTGGA GAGGAGGCCG TGACCCTTCT AGAAGACTTG GAGCTTGATT
481TATCAGGACA ACAGGTCCCA GGTCAAGTTC ATGGACCTGA GATGCTCGCA AGGGGGATGG
541TGCCTCTGGA TCCAGTTCAG GAGTCCTCGA GCTTTGACCT TCATCACGAG GCCACCCAGT
601CCCACTTCAA ACATTCGTCT CGGAAACCCC GCCTCTTACA GTCACGAGCT CTTCCTGCTG
661CCCACATTCC TGCACCCCCT CATGAGGGTA GTCCCAGAGA CCAGGCGATG GCATCTGCAC
721TATTCACAGC GGATTCCCAG GCAATGGTGA AGATCGAGGA CATGGCTGTG TCCCTCATTC
781TGGAGGAATG GGGATGTCAG AATCTGGCTC GGAGGAATCT CAGTAGGGAC AACAGGCAGG
841AGAATTATGG GAGCGCATTT CCCCAGGGTG GTGAAAACAG GAATGAGAAC GAGGAGTCAA
901CCTCAAAGGC TGAAACCTCG GAAGATTCAG CATCACGCGG GGAGACAACA GGAAGATCCC
961AGAAAGAGTT TGGAGAGAAA CGTGACCAGG AGGGCAAAAC AGGAGAAAGA CAGCAGAAAA
1021ACCCTGAGGA GAAAACCAGG AAAGAGAAAA GAGATTCAGG GCCAGCTATA GGAAAGGACA
1081AAAAAACCAT CACAGGAGAG AGAGGTCCAA GGGAGAAGGG GAAAGGATTG GGAAGAAGCT
1141TCAGTCTGAG CTCCAACTTC ACCACCCCTG AAGAAGTTCC CACGGGAACA AAGTCTCACA
1201GATGTGATGA ATGTGGTAAA TGCTTCACGA GAAGTTCAAG CCTTATCCGC CATAAAATAA
1261TCCACACTGG AGAAAAGCCC TATGAATGTA GTGAGTGTGG GAAAGCCTTC AGTCTTAACT
1321CCAACCTTGT CCTGCATCAG AGGATCCACA CAGGAGAGAA ACCTCATGAA TGTAACGAGT
1381GTGGCAAGGC CTTCAGCCAC AGTTCCAATC TCATCCTCCA TCAGCGCATC CACTCTGGAG
1441AGAAACCTTA TGAATGTAAT GAGTGCGGGA AGGCCTTCAG CCAGAGCTCG GACCTCACCA
1501AGCATCAGAG AATTCACACG GGGGAGAAAC CCTATGAATG TAGTGAATGT GGAAAAGCTT
1561TCAACCGAAA CTCATACCTG ATTTTGCATC GGAGAATTCA CACTCGAGAA AAGCCCTACA
1621AGTGCACTAA GTGTGGCAAG GCCTTCACCC GCAGCTCCAC CCTCACTCTG CATCACAGAA
1681TCCATGCCAG AGAGAGAGCC TCTGAGTACA GCCCAGCCTC CCTTGATGCA TTTGGCGCGT
1741TCCTGAAAAG TTGTGTGTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1801gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)