Construct: ORF ccsbBroadEn_01805
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004997.1_s300c1, BRDN0000394582
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF75A (7627)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_153028.3 | 100% | 100% | |
| 2 | human | 7627 | ZNF75A | zinc finger protein 75a | XM_011522647.2 | 100% | 100% | |
| 3 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452443.1 | 65.3% | 59.1% | (many diffs) |
| 4 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452444.1 | 65.3% | 59.1% | (many diffs) |
| 5 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452445.1 | 65.3% | 59.1% | (many diffs) |
| 6 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_005262471.3 | 64% | 57.6% | (many diffs) |
| 7 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001352495.1 | 60.1% | 60.1% | 0_1ins354 |
| 8 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001352497.1 | 60.1% | 60.1% | 0_1ins354 |
| 9 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001352498.1 | 60.1% | 60.1% | 0_1ins354 |
| 10 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_011531397.3 | 58% | 52.1% | (many diffs) |
| 11 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_017029820.2 | 58% | 52.1% | (many diffs) |
| 12 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_011531396.3 | 57.5% | 51.7% | (many diffs) |
| 13 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001302109.1 | 55.1% | 55.1% | 1_723del |
| 14 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001324041.1 | 55.1% | 55.1% | 1_723del |
| 15 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_011531395.3 | 54.9% | 49.3% | (many diffs) |
| 16 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452442.1 | 54.4% | 48.8% | (many diffs) |
| 17 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452446.1 | 53.6% | 50% | (many diffs) |
| 18 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_017029819.2 | 52.8% | 47.4% | (many diffs) |
| 19 | human | 7626 | ZNF75D | zinc finger protein 75D | NM_001185063.2 | 48.3% | 43.3% | (many diffs) |
| 20 | human | 7627 | ZNF75A | zinc finger protein 75a | XM_011522646.3 | 48.2% | 48.2% | 1_723del;821_822ins111 |
| 21 | human | 7626 | ZNF75D | zinc finger protein 75D | NM_007131.5 | 40% | 35.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 957
- ORF length:
- 888
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTATTTTTCC CAGGAAGAAT GGGAGTTATT GGATCCCACT CAGAAGGCCC 121 TCTACAATGA TGTAATGCAG GAAAACTATG AGACTGTCAT CTCTCTAGCA TTGTTTGTGC 181 TCCCCAAACC TAAAGTGATC TCCTGTCTAG AGCAAGGGGA AGAGCCATGG GTTCAAGTAT 241 CCCCGGAGTT TAAGGATAGT GCCGGAAAAT CTCCTACAGG GTTAAAGCTC AAAAACGACA 301 CTGAAAATCA TCAGCCTGTG TCTCTTTCTG ACTTAGAAAT ACAAGCATCA GCAGGCGTCA 361 TATCAAAAAA GGCCAAAGTA AAAGTTCCCC AGAAAACAGC AGGCAAAGAA AATCATTTTG 421 ATATGCACAG AGTGGGAAAA TGGCACCAAG ATTTTCCAGT GAAGAAAAGA AAGAAACTTT 481 CAACCTGGAA ACAAGAGCTG CTCAAACTTA TGGATCGTCA CAAGAAAGAT TGTGCAAGAG 541 AGAAGCCTTT TAAATGTCAG GAATGTGGGA AAACCTTCAG AGTTAGCTCT GACCTTATTA 601 AGCACCAAAG AATTCACACT GAAGAGAAAC CCTATAAATG TCAACAGTGT GATAAGAGGT 661 TTAGATGGAG TTCAGATCTT AATAAGCACT TAACAACACA CCAAGGAATA AAACCATATA 721 AATGTTCATG GTGTGGGAAA AGCTTCAGTC AAAATACAAA TTTACATACA CACCAAAGAA 781 CTCATACAGG AGAAAAGCCC TTCACATGTC ATGAATGTGG AAAAAAATTC AGTCAGAACT 841 CCCACCTTAT TAAACACCGG AGAACCCACA CAGGTGAGCA GCCATATACT TGTAGCATAT 901 GCAGGAGAAA CTTCAGCAGG CGGTCAAGCC TTCTTAGACA CCAGAAACTC CACCTGTTGC 961 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1021 aac