Construct: ORF ccsbBroadEn_01873

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009972.1_s300c1, BRDN0000398274
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYN3 (8224)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8224 SYN3 synapsin III NM_001135774.2 100% 100%
2 human 8224 SYN3 synapsin III NM_001369909.1 100% 100%
3 human 8224 SYN3 synapsin III NM_001369910.1 100% 100%
4 human 8224 SYN3 synapsin III NM_001369907.1 99.8% 99.8% 460_462delAGC
5 human 8224 SYN3 synapsin III NM_001369908.1 99.8% 99.8% 460_462delAGC
6 human 8224 SYN3 synapsin III NM_003490.4 99.8% 99.8% 460_462delAGC
7 human 8224 SYN3 synapsin III XM_011530405.3 99.8% 99.8% 460_462delAGC
8 human 8224 SYN3 synapsin III XM_017028961.2 99.8% 99.8% 460_462delAGC
9 human 8224 SYN3 synapsin III XM_017028962.2 99.8% 99.8% 460_462delAGC
10 human 8224 SYN3 synapsin III XM_017028963.2 99.8% 99.8% 460_462delAGC
11 human 8224 SYN3 synapsin III XM_011530410.3 79.2% 78.7% (many diffs)
12 human 8224 SYN3 synapsin III NM_133633.3 76.2% 75.8% (many diffs)
13 human 8224 SYN3 synapsin III XM_017028965.2 52.6% 52.6% 0_1ins822
14 human 8224 SYN3 synapsin III XR_001755317.2 52.4% (many diffs)
15 mouse 27204 Syn3 synapsin III NM_013722.3 87.7% 92.4% (many diffs)
16 mouse 27204 Syn3 synapsin III XM_006513698.2 87.7% 92.4% (many diffs)
17 mouse 27204 Syn3 synapsin III XM_006513699.3 87.7% 92.4% (many diffs)
18 mouse 27204 Syn3 synapsin III XM_006513700.3 87.7% 92.4% (many diffs)
19 mouse 27204 Syn3 synapsin III XM_011243459.2 50.1% 49.5% (many diffs)
20 mouse 27204 Syn3 synapsin III XM_011243460.2 49.3% 51.6% (many diffs)
21 mouse 27204 Syn3 synapsin III XM_006513702.3 41.5% 36.9% (many diffs)
22 mouse 27204 Syn3 synapsin III XM_011243461.2 40.6% 41.6% (many diffs)
23 mouse 27204 Syn3 synapsin III NM_001164495.1 36.8% 38.5% (many diffs)
24 mouse 27204 Syn3 synapsin III XM_011243462.2 36.5% 38.1% (many diffs)
25 mouse 27204 Syn3 synapsin III XM_006513704.3 36.2% 38.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1806
ORF length:
1737
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAATTTCCTC CGGCGACGTC TCTCTGACAG CAGCTTCATG GCCAACCTGC
121CTAATGGCTA TATGACGGAC CTGCAACGCC CAGATAGCTC CACCAGCTCA CCTGCTTCCC
181CCGCCATGGA GAGGAGGCAC CCCCAGCCCC TGGCTGCCTC CTTCTCCTCT CCAGGATCCA
241GCCTTTTTAG CTCCCTCTCC AGTGCCATGA AGCAGGCCCC TCAGGCCACC TCAGGACTGA
301TGGAGCCTCC AGGTCCCTCC ACGCCCATTG TTCAAAGACC CAGGATCCTG TTGGTGATCG
361ATGATGCCCA TACAGACTGG TCGAAGTATT TCCATGGGAA GAAGGTGAAT GGAGAGATTG
421AGATCCGAGT GGAGCAGGCT GAATTCTCAG AGTTGAACCT AGCTGCCTAT GTGACCGGGG
481GCTGCATGGT GGACATGCAG GTCGTGAGAA ATGGGACCAA AGTGGTGAGA TCCTTCAAGC
541CAGACTTCAT CCTGGTCCGC CAGCATGCCT ACAGCATGGC CCTGGGGGAA GACTACCGCA
601GCCTGGTCAT CGGCCTGCAG TATGGAGGGC TGCCTGCTGT CAACTCTCTC TACTCCGTCT
661ACAACTTCTG CAGCAAGCCC TGGGTGTTCT CTCAGCTCAT TAAGATCTTC CATTCCCTGG
721GTCCTGAGAA GTTCCCGCTT GTGGAGCAAA CATTTTTCCC CAACCATAAG CCAATGGTCA
781CAGCCCCACA CTTCCCGGTG GTAGTCAAGC TGGGACATGC CCACGCTGGA ATGGGAAAGA
841TCAAAGTGGA AAACCAGCTT GACTTCCAGG ACATCACCAG CGTGGTCGCC ATGGCCAAAA
901CCTACGCCAC CACCGAGGCC TTCATCGACT CCAAGTACGA CATCCGCATC CAGAAAATTG
961GATCCAACTA CAAGGCTTAC ATGAGAACCT CCATCTCTGG GAACTGGAAG GCCAACACAG
1021GCTCTGCCAT GCTGGAGCAG GTGGCCATGA CAGAGAGGTA CAGGCTGTGG GTGGACAGCT
1081GCTCGGAAAT GTTTGGCGGC CTGGACATCT GTGCCGTCAA GGCTGTCCAC AGCAAGGATG
1141GCAGAGATTA CATCATCGAG GTAATGGACA GCTCAATGCC GCTGATTGGA GAGCATGTGG
1201AAGAGGACAG ACAGCTGATG GCCGACCTTG TTGTCTCCAA AATGAGCCAG CTCCCGATGC
1261CAGGAGGCAC AGCGCCCTCC CCCCTCAGAC CTTGGGCTCC ACAGATTAAA TCAGCGAAAT
1321CCCCAGGGCA AGCCCAGCTG GGGCCTCAGC TAGGCCAGCC CCAGCCACGC CCACCTCCGC
1381AAGGAGGCCC TCGCCAAGCT CAGTCTCCTC AGCCCCAGAG ATCTGGAAGC CCCTCCCAAC
1441AGAGGCTCTC CCCACAAGGC CAGCAGCCCC TGAGCCCCCA GTCCGGATCT CCACAGCAGC
1501AAAGGTCACC AGGCTCTCCG CAGCTATCCC GGGCATCCAG TGGCAGCTCC CCAAACCAGG
1561CCTCCAAGCC AGGTGCCACC CTCGCCTCAC AGCCCCGGCC CCCTGTGCAG GGCCGTAGTA
1621CCTCCCAGCA GGGTGAAGAG TCCAAGAAGC CAGCACCACC CCATCCGCAT CTCAACAAAT
1681CTCAGTCCCT GACTAACAGC CTCAGCACAT CCGACACCTC CCAGCGTGGG ACCCCAAGTG
1741AAGACGAGGC CAAGGCTGAA ACCATCCGCA ACCTGAGGAA GTCTTTTGCC AGCCTGTTCT
1801CTGACTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1861gttgcaacga ac

Download FASTA (ORF) (Full)