Construct: ORF ccsbBroadEn_01909
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014930.1_s300c1, BRDN0000388090
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- H3C2 (8358)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8358 | H3C2 | H3 clustered histone 2 | NM_003537.3 | 100% | 100% | |
| 2 | human | 8351 | H3C4 | H3 clustered histone 4 | NM_003530.4 | 87.2% | 100% | (many diffs) |
| 3 | human | 8355 | H3C8 | H3 clustered histone 8 | NM_003534.2 | 86.5% | 100% | (many diffs) |
| 4 | human | 8353 | H3C6 | H3 clustered histone 6 | NM_003532.2 | 86.2% | 100% | (many diffs) |
| 5 | human | 8354 | H3C11 | H3 clustered histone 11 | NM_003533.2 | 85.5% | 100% | (many diffs) |
| 6 | human | 8352 | H3C3 | H3 clustered histone 3 | NM_003531.2 | 85% | 100% | (many diffs) |
| 7 | human | 8357 | H3C10 | H3 clustered histone 10 | NM_003536.2 | 84.3% | 100% | (many diffs) |
| 8 | human | 8350 | H3C1 | H3 clustered histone 1 | NM_003529.2 | 84.3% | 100% | (many diffs) |
| 9 | human | 8968 | H3C7 | H3 clustered histone 7 | NM_021018.2 | 84% | 100% | (many diffs) |
| 10 | human | 333932 | H3C15 | H3 clustered histone 15 | NM_001005464.2 | 82% | 99.2% | (many diffs) |
| 11 | human | 653604 | H3C13 | H3 clustered histone 13 | NM_001123375.2 | 82% | 99.2% | (many diffs) |
| 12 | human | 126961 | H3C14 | H3 clustered histone 14 | NM_021059.2 | 82% | 99.2% | (many diffs) |
| 13 | human | 440686 | H3-2 | H3.2 histone (putative) | NM_001355409.3 | 81.3% | 97% | (many diffs) |
| 14 | human | 440686 | H3-2 | H3.2 histone (putative) | NM_001372105.1 | 81.3% | 97% | (many diffs) |
| 15 | human | 8356 | H3C12 | H3 clustered histone 12 | NM_003535.2 | 80.8% | 100% | (many diffs) |
| 16 | human | 8290 | H3-4 | H3.4 histone | NM_003493.2 | 80.3% | 97% | (many diffs) |
| 17 | human | 3020 | H3-3A | H3.3 histone A | NM_002107.6 | 77.6% | 96.3% | (many diffs) |
| 18 | human | 3021 | H3-3B | H3.3 histone B | NM_005324.5 | 77.2% | 96.3% | (many diffs) |
| 19 | human | 440093 | H3-5 | H3.5 histone | NM_001013699.3 | 76.2% | 93.3% | (many diffs) |
| 20 | mouse | 319153 | Hist1h3i | histone cluster 1, H3i | NM_178207.2 | 86.5% | 100% | (many diffs) |
| 21 | mouse | 319152 | Hist1h3h | histone cluster 1, H3h | NM_178206.2 | 86.2% | 100% | (many diffs) |
| 22 | mouse | 97908 | Hist1h3g | histone cluster 1, H3g | NM_145073.2 | 86% | 100% | (many diffs) |
| 23 | mouse | 319148 | Hist1h3c | histone cluster 1, H3c | NM_175653.2 | 86% | 99.2% | (many diffs) |
| 24 | mouse | 319150 | Hist1h3b | histone cluster 1, H3b | NM_178203.2 | 86% | 99.2% | (many diffs) |
| 25 | mouse | 360198 | Hist1h3a | histone cluster 1, H3a | NM_013550.5 | 85.7% | 100% | (many diffs) |
| 26 | mouse | 319149 | Hist1h3d | histone cluster 1, H3d | NM_178204.2 | 85.5% | 99.2% | (many diffs) |
| 27 | mouse | 319151 | Hist1h3e | histone cluster 1, H3e | NM_178205.2 | 84.2% | 99.2% | (many diffs) |
| 28 | mouse | 260423 | Hist1h3f | histone cluster 1, H3f | NM_013548.4 | 83.9% | 99.2% | (many diffs) |
| 29 | mouse | 97114 | Hist2h3c2 | histone cluster 2, H3c2 | NM_054045.4 | 83.4% | 99.2% | (many diffs) |
| 30 | mouse | 319154 | Hist2h3b | histone cluster 2, H3b | NM_178215.2 | 83.4% | 99.2% | (many diffs) |
| 31 | mouse | 15077 | Hist2h3c1 | histone cluster 2, H3c1 | NM_178216.3 | 83.4% | 99.2% | (many diffs) |
| 32 | mouse | 382523 | Gm12260 | predicted gene 12260 | NM_001318003.2 | 83% | 97.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 477
- ORF length:
- 408
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTCGTACT AAACAGACAG CTCGGAAATC CACCGGCGGT AAAGCGCCAC 121 GCAAGCAGCT GGCTACCAAG GCTGCTCGCA AGAGCGCGCC GGCTACCGGC GGCGTGAAAA 181 AGCCTCACCG TTACCGCCCG GGCACTGTGG CTCTGCGCGA GATCCGCCGC TACCAAAAGT 241 CGACCGAGTT GCTGATTCGG AAGCTGCCGT TCCAGCGCCT GGTGCGAGAA ATCGCCCAAG 301 ACTTCAAGAC CGATCTTCGC TTCCAGAGCT CTGCGGTGAT GGCGCTGCAG GAGGCTTGTG 361 AGGCCTACTT GGTAGGGCTC TTTGAGGACA CAAACCTTTG CGCCATCCAT GCTAAGCGAG 421 TGACTATTAT GCCCAAAGAC ATCCAGCTCG CTCGCCGCAT TCGCGGAGAA AGAGCGTTGC 481 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 541 aac