Construct: ORF ccsbBroadEn_01922

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004873.1_s300c1, BRDN0000394028
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SRPX (8406)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8406 SRPX sushi repeat containing pro... NM_006307.5 100% 100%
2 human 8406 SRPX sushi repeat containing pro... NM_001170750.1 95.6% 95.6% 95_96ins60
3 human 8406 SRPX sushi repeat containing pro... XM_017029893.2 89% 87.5% (many diffs)
4 human 8406 SRPX sushi repeat containing pro... NM_001170751.1 87.2% 87% 349_350ins177
5 human 8406 SRPX sushi repeat containing pro... NM_001170752.1 81.6% 79.5% 1086_1087ins122;1137_1138ins133
6 mouse 51795 Srpx sushi-repeat-containing pro... NM_016911.4 87.8% 92.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1458
ORF length:
1392
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GAGCCCCGCA CATCGGCCCG CGCTGCTGCT GCTGCTGCCG CCTCTGCTGC
121TGCTGCTGCT GCTGCGCGTC CCGCCCAGCC GCAGCTTCCC AGGATCGGGA GACTCACCAC
181TAGAAGACGA TGAAGTCGGG TATTCACACC CTAGATATAA AGATACCCCG TGGTGCTCCC
241CCATCAAGGT GAAGTATGGG GATGTGTACT GCAGGGCCCC TCAAGGAGGA TACTACAAAA
301CAGCCCTGGG AACCAGGTGC GACATTCGCT GCCAGAAGGG CTACGAGCTG CATGGCTCTT
361CCCTACTGAT CTGCCAGTCA AACAAACGAT GGTCTGACAA GGTCATCTGC AAACAAAAGC
421GATGTCCTAC CCTTGCCATG CCAGCAAATG GAGGGTTTAA GTGTGTAGAT GGTGCCTACT
481TTAACTCCCG GTGTGAGTAT TATTGTTCAC CAGGATACAC GTTGAAAGGG GAGCGGACCG
541TCACATGTAT GGACAACAAG GCCTGGAGCG GCCGGCCAGC CTCCTGTGTG GATATGGAAC
601CTCCTAGAAT CAAGTGCCCA AGTGTGAAGG AACGCATTGC AGAACCCAAC AAACTGACAG
661TCCGGGTGTC CTGGGAGACA CCCGAAGGAA GAGACACAGC AGATGGAATT CTTACTGATG
721TCATTCTAAA AGGCCTCCCC CCAGGCTCCA ACTTTCCAGA AGGAGACCAC AAGATCCAGT
781ACACAGTCTA TGACAGAGCT GAGAATAAGG GCACTTGCAA ATTTCGAGTT AAAGTAAGAG
841TCAAACGCTG TGGCAAACTC AATGCCCCAG AGAATGGTTA CATGAAGTGC TCCAGCGACG
901GTGATAATTA TGGAGCCACC TGTGAGTTCT CCTGCATCGG CGGCTATGAG CTCCAGGGTA
961GCCCTGCCCG AGTATGTCAA TCCAACCTGG CTTGGTCTGG CACGGAGCCC ACCTGTGCAG
1021CCATGAACGT CAATGTGGGT GTCAGAACGG CAGCTGCACT TCTGGATCAG TTTTATGAGA
1081AAAGGAGACT CCTCATTGTG TCCACACCCA CAGCCCGAAA CCTCCTTTAC CGGCTCCAGC
1141TAGGAATGCT GCAGCAAGCA CAGTGTGGCC TTGATCTTCG ACACATCACC GTGGTGGAGC
1201TGGTGGGTGT GTTCCCGACT CTCATTGGCA GGATAGGAGC AAAGATTATG CCTCCAGCCC
1261TAGCGCTGCA GCTCAGGCTG TTGCTGCGAA TCCCACTCTA CTCCTTCAGT ATGGTGCTAG
1321TGGATAAGCA TGGCATGGAC AAAGAGCGCT ATGTCTCCCT GGTGATGCCT GTGGCCCTGT
1381TCAACCTGAT TGACACTTTT CCCTTGAGAA AAGAAGAGAT GGTCCTACAA GCCGAAATGA
1441GCCAGACCTG TAACACCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1501gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)