Transcript: Human NM_001170752.1

Homo sapiens sushi repeat containing protein X-linked (SRPX), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
SRPX (8406)
Length:
1798
CDS:
133..1272

Additional Resources:

NCBI RefSeq record:
NM_001170752.1
NBCI Gene record:
SRPX (8406)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001170752.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000083987 GCACTTGCAAATTTCGAGTTA pLKO.1 878 CDS 100% 4.950 6.930 N SRPX n/a
2 TRCN0000083983 CCATAACCATACACAGGCTAT pLKO.1 1667 3UTR 100% 4.050 5.670 N SRPX n/a
3 TRCN0000083984 CCTACTGATCTGCCAGTCAAA pLKO.1 429 CDS 100% 4.950 3.465 N SRPX n/a
4 TRCN0000083986 CCCACTCTACTCCTTCAGTAT pLKO.1 1237 CDS 100% 4.950 2.970 N SRPX n/a
5 TRCN0000083985 CCCAGAGAATGGTTACATGAA pLKO.1 933 CDS 100% 4.950 2.970 N SRPX n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001170752.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01922 pDONR223 100% 81.6% 79.5% None 1086_1087ins122;1137_1138ins133 n/a
2 ccsbBroad304_01922 pLX_304 44.6% 81.6% 79.5% V5 1086_1087ins122;1137_1138ins133 n/a
3 TRCN0000479942 ACGGAATTTCCCAGGTCCCTTACA pLX_317 26.6% 81.6% 79.5% V5 1086_1087ins122;1137_1138ins133 n/a
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