Construct: ORF ccsbBroadEn_01925

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017643.1_s300c1, BRDN0000386028
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STX7 (8417)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8417 STX7 syntaxin 7 NM_001326578.2 100% 100%
2 human 8417 STX7 syntaxin 7 NM_001326579.1 100% 100%
3 human 8417 STX7 syntaxin 7 NM_003569.3 100% 100%
4 human 8417 STX7 syntaxin 7 NM_001326580.2 89.8% 89.2% (many diffs)
5 human 8417 STX7 syntaxin 7 NR_137169.2 4.4% 1_168del;705_706ins73;879_15772del
6 mouse 53331 Stx7 syntaxin 7 NM_016797.4 87% 94.2% (many diffs)
7 mouse 53331 Stx7 syntaxin 7 XM_006512800.2 87% 94.2% (many diffs)
8 mouse 53331 Stx7 syntaxin 7 XM_006512801.3 87% 94.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
849
ORF length:
783
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAGG
61TTGGCATGTC TTACACTCCA GGAGTTGGTG GTGACCCCGC CCAGTTGGCC CAGAGGATCT
121CTTCTAACAT CCAGAAGATC ACACAGTGTT CTGTGGAAAT ACAAAGAACT CTGAATCAAC
181TTGGAACACC TCAAGATTCA CCTGAATTGA GGCAACAGTT GCAACAGAAG CAGCAGTATA
241CTAACCAGCT TGCCAAAGAA ACAGATAAGT ACATTAAAGA GTTTGGATCT CTGCCCACCA
301CCCCCAGTGA ACAGCGTCAA AGGAAAATAC AGAAGGATCG CTTAGTGGCA GAGTTCACAA
361CATCACTGAC AAACTTCCAG AAGGTCCAGA GGCAGGCTGC TGAGCGAGAG AAAGAGTTTG
421TTGCTCGAGT AAGAGCCAGT TCCAGAGTGT CTGGCAGTTT TCCTGAGGAC AGCTCAAAAG
481AAAGGAATCT TGTATCCTGG GAAAGCCAAA CTCAACCTCA AGTGCAGGTG CAGGATGAAG
541AAATTACAGA GGATGACCTC CGTCTTATTC ATGAGAGAGA ATCTTCTATC AGGCAACTTG
601AAGCTGATAT TATGGATATT AATGAAATAT TTAAAGATTT GGGAATGATG ATTCATGAAC
661AAGGAGATGT AATAGATAGC ATAGAAGCCA ATGTGGAAAA TGCAGAGGTG CACGTTCAGC
721AAGCAAATCA GCAGCTGTCA AGGGCAGCAG ATTATCAGCG CAAATCCAGA AAAACCCTGT
781GCATCATCAT TCTTATCCTT GTCATTGGAG TTGCGATTAT CAGTCTCATC ATATGGGGAT
841TGAACCACTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
901tttgttgcaa cgaac

Download FASTA (ORF) (Full)