Construct: ORF ccsbBroadEn_02176

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018425.1_s300c1, BRDN0000391574
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPH3AL (9501)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9501 RPH3AL rabphilin 3A like (without ... NM_001190411.1 100% 100%
2 human 9501 RPH3AL rabphilin 3A like (without ... NM_006987.4 100% 100%
3 human 9501 RPH3AL rabphilin 3A like (without ... NM_001190412.2 90.7% 90.7% 349_350ins87
4 human 9501 RPH3AL rabphilin 3A like (without ... NM_001190413.2 90.7% 90.7% 349_350ins87
5 mouse 380714 Rph3al rabphilin 3A-like (without ... NM_029548.4 80.3% 78.1% (many diffs)
6 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_006533637.1 80.3% 78.1% (many diffs)
7 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_006533638.3 80.3% 78.1% (many diffs)
8 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_006533639.3 80.3% 78.1% (many diffs)
9 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_006533640.3 80.3% 78.1% (many diffs)
10 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_006533641.3 80.3% 78.1% (many diffs)
11 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_006533642.3 80.3% 78.1% (many diffs)
12 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_011249100.1 60.1% 60.8% (many diffs)
13 mouse 380714 Rph3al rabphilin 3A-like (without ... NM_001291159.1 38.1% 34.5% (many diffs)
14 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_011249101.1 38.1% 34.5% (many diffs)
15 mouse 380714 Rph3al rabphilin 3A-like (without ... XM_011249102.1 38.1% 34.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1014
ORF length:
945
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCGACACC ATCTTCGGCA GCGGGAATGA TCAGTGGGTT TGCCCCAATG
121ACCGGCAGCT TGCCCTTCGA GCCAAGCTGC AGACGGGCTG GTCCGTGCAC ACCTACCAGA
181CGGAGAAGCA GAGGAGGAAG CAGCACCTCA GCCCGGCGGA GGTGGAGGCC ATCCTGCAGG
241TCATCCAGAG GGCAGAGCGG CTCGACGTCC TGGAGCAGCA GAGAATCGGG CGGCTGGTGG
301AGCGGCTGGA GACCATGAGG CGGAATGTGA TGGGGAACGG CCTGTCCCAG TGTCTGCTCT
361GCGGGGAGGT GCTGGGCTTC CTGGGCAGCT CGTCGGTGTT CTGCAAAGAC TGCAGGAAGA
421AAGTCTGCAC CAAATGTGGG ATCGAGGCCT CCCCTGGCCA GAAGCGGCCC CTGTGGCTGT
481GTAAGATCTG CAGTGAGCAA AGAGAGGTCT GGAAGAGGTC GGGGGCCTGG TTCTACAAAG
541GGCTCCCCAA GTATATCTTG CCCCTGAAGA CCCCTGGCCG AGCTGATGAC CCCCACTTCC
601GACCTTTGCC CACGGAACCG GCAGAGCGAG AGCCCAGAAG CTCTGAGACC AGCCGCATCT
661ACACGTGGGC CCGAGGAAGA GTGGTTTCCA GTGACAGTGA CAGTGACTCG GATCTTAGCT
721CCTCCAGCCT AGAGGACAGA CTCCCATCCA CTGGGGTCAG GGACCGGAAA GGCGACAAAC
781CCTGGAAGGA GTCAGGTGGC AGCGTGGAGG CCCCCAGGAT GGGGTTCACC CACCCGCCGG
841GCCACCTCTC TGGGTGCCAG AGCAGCCTGG CCAGTGGTGA GACGGGGACA GGCTCTGCTG
901ACCCGCCAGG GGGACCCCGC CCCGGGCTGA CCCGAAGGGC CCCGGTAAAA GACACACCTG
961GACGAGCCCC CGCTGCTGAC GCAGCTCCAG CAGGCCCCTC CAGCTGCCTG GGCTTGCCAA
1021CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)