Construct: ORF ccsbBroadEn_02219
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009549.1_s300c1, BRDN0000387165
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MORF4L2 (9643)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142418.1 | 100% | 100% | |
| 2 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142419.1 | 100% | 100% | |
| 3 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142420.1 | 100% | 100% | |
| 4 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142421.1 | 100% | 100% | |
| 5 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142422.1 | 100% | 100% | |
| 6 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142423.1 | 100% | 100% | |
| 7 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142424.1 | 100% | 100% | |
| 8 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142425.1 | 100% | 100% | |
| 9 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142426.1 | 100% | 100% | |
| 10 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142427.1 | 100% | 100% | |
| 11 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142428.1 | 100% | 100% | |
| 12 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142429.1 | 100% | 100% | |
| 13 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142430.1 | 100% | 100% | |
| 14 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142431.1 | 100% | 100% | |
| 15 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_001142432.1 | 100% | 100% | |
| 16 | human | 9643 | MORF4L2 | mortality factor 4 like 2 | NM_012286.3 | 100% | 100% | |
| 17 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_001265603.1 | 68.3% | 71.1% | (many diffs) |
| 18 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_001265604.1 | 68.3% | 71.1% | (many diffs) |
| 19 | human | 10933 | MORF4L1 | mortality factor 4 like 1 | NM_001265605.1 | 68.3% | 71.1% | (many diffs) |
| 20 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | NM_001168225.1 | 87.7% | 95.1% | (many diffs) |
| 21 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | NM_001168226.1 | 87.7% | 95.1% | (many diffs) |
| 22 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | NM_001168227.1 | 87.7% | 95.1% | (many diffs) |
| 23 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | NM_001168228.1 | 87.7% | 95.1% | (many diffs) |
| 24 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | NM_001168229.1 | 87.7% | 95.1% | (many diffs) |
| 25 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | NM_001168230.1 | 87.7% | 95.1% | (many diffs) |
| 26 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | NM_019768.4 | 87.7% | 95.1% | (many diffs) |
| 27 | mouse | 56397 | Morf4l2 | mortality factor 4 like 2 | XM_006528584.1 | 87.7% | 95.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 930
- ORF length:
- 864
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TTCCAGAAAG CAGGGTTCTC AACCTCGTGG ACAGCAATCT GCAGAAGAAG 121 AGAACTTCAA AAAACCAACT AGAAGCAACA TGCAGAGAAG TAAAATGAGA GGGGCCTCCT 181 CAGGAAAGAA GACAGCTGGT CCACAGCAGA AAAATCTTGA ACCAGCTCTC CCAGGAAGAT 241 GGGGTGGTCG CTCTGCAGAG AACCCCCCTT CAGGATCCGT GAGGAAGACC AGAAAGAACA 301 AGCAGAAGAC TCCTGGAAAC GGAGATGGTG GCAGTACCAG CGAAGCACCT CAGCCCCCTC 361 GGAAGAAAAG GGCCCGGGCA GACCCCACTG TTGAAAGTGA GGAGGCGTTT AAGAATAGAA 421 TGGAGGTTAA AGTGAAGATT CCTGAAGAAT TAAAACCATG GCTTGTTGAG GACTGGGACT 481 TAGTTACCAG GCAGAAGCAG CTGTTTCAAC TCCCTGCCAA GAAAAATGTA GATGCAATTC 541 TGGAGGAGTA TGCAAATTGC AAGAAATCGC AGGGAAATGT TGATAATAAG GAATATGCGG 601 TTAATGAAGT TGTGGCAGGA ATAAAAGAAT ATTTCAATGT GATGTTGGGC ACTCAGCTGC 661 TCTACAAATT TGAGAGGCCC CAGTATGCTG AAATCCTCTT GGCTCACCCT GATGCTCCAA 721 TGTCCCAGGT TTATGGAGCA CCACACCTAC TGAGATTATT TGTAAGAATT GGAGCAATGT 781 TGGCCTATAC GCCCCTTGAT GAGAAAAGCC TTGCATTATT GTTGGGCTAT TTGCATGATT 841 TCCTAAAATA TCTGGCAAAG AATTCTGCAT CTCTCTTTAC TGCCAGTGAT TACAAAGTGG 901 CTTCTGCTGA GTACCACCGC AAAGCCCTGT GCCCAACTTT CTTGTACAAA GTtggcatta 961 taagaaagca ttgcttatca atttgttgca acgaac