Transcript: Mouse NM_001168225.1

Mus musculus mortality factor 4 like 2 (Morf4l2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Morf4l2 (56397)
Length:
1947
CDS:
402..1268

Additional Resources:

NCBI RefSeq record:
NM_001168225.1
NBCI Gene record:
Morf4l2 (56397)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001168225.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095668 GCTGGGCTATCTGCATGATTT pLKO.1 1157 CDS 100% 13.200 18.480 N Morf4l2 n/a
2 TRCN0000095666 CGCAGGGAAATGTTGATAATA pLKO.1 904 CDS 100% 15.000 12.000 N Morf4l2 n/a
3 TRCN0000332779 CGCAGGGAAATGTTGATAATA pLKO_005 904 CDS 100% 15.000 12.000 N Morf4l2 n/a
4 TRCN0000422729 TTACTGCCAGTGATTACAAAG pLKO_005 1213 CDS 100% 10.800 7.560 N MORF4L2 n/a
5 TRCN0000095664 CCGCTCACTATTGTCTGGTAT pLKO.1 1280 3UTR 100% 4.950 3.465 N Morf4l2 n/a
6 TRCN0000332778 CCGCTCACTATTGTCTGGTAT pLKO_005 1280 3UTR 100% 4.950 3.465 N Morf4l2 n/a
7 TRCN0000095665 CCTGAGATTATTCGTGAGAAT pLKO.1 1085 CDS 100% 4.950 3.465 N Morf4l2 n/a
8 TRCN0000332848 CCTGAGATTATTCGTGAGAAT pLKO_005 1085 CDS 100% 4.950 3.465 N Morf4l2 n/a
9 TRCN0000306688 TTATGGTGCTTGACGTCTGTA pLKO_005 1674 3UTR 100% 4.950 3.465 N Morf4l2 n/a
10 TRCN0000095667 CGTGGACAACAATCTGCTGAA pLKO.1 432 CDS 100% 4.050 2.835 N Morf4l2 n/a
11 TRCN0000332849 CGTGGACAACAATCTGCTGAA pLKO_005 432 CDS 100% 4.050 2.835 N Morf4l2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001168225.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02219 pDONR223 100% 87.7% 95.1% None (many diffs) n/a
2 ccsbBroad304_02219 pLX_304 0% 87.7% 95.1% V5 (many diffs) n/a
3 TRCN0000473386 TACGACTGAGGTCCGCGTAAGGTC pLX_317 65.6% 87.7% 95.1% V5 (many diffs) n/a
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