Construct: ORF ccsbBroadEn_02227
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017623.1_s300c1, BRDN0000393295
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLINT1 (9685)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9685 | CLINT1 | clathrin interactor 1 | NM_014666.4 | 100% | 100% | |
| 2 | human | 9685 | CLINT1 | clathrin interactor 1 | NM_001195555.2 | 97.2% | 97.2% | 1378_1431del |
| 3 | human | 9685 | CLINT1 | clathrin interactor 1 | NM_001195556.2 | 94.4% | 94.4% | 0_1ins54;1324_1377del |
| 4 | human | 9685 | CLINT1 | clathrin interactor 1 | XM_017010087.2 | 82.1% | 81.7% | (many diffs) |
| 5 | human | 9685 | CLINT1 | clathrin interactor 1 | XM_011534701.3 | 79.8% | 79.4% | (many diffs) |
| 6 | human | 9685 | CLINT1 | clathrin interactor 1 | XM_017010088.2 | 74.1% | 72.7% | (many diffs) |
| 7 | mouse | 216705 | Clint1 | clathrin interactor 1 | NM_001045520.3 | 89.7% | 94.4% | (many diffs) |
| 8 | mouse | 216705 | Clint1 | clathrin interactor 1 | NM_001346760.1 | 87.2% | 91.7% | (many diffs) |
| 9 | mouse | 216705 | Clint1 | clathrin interactor 1 | XM_006532840.3 | 85.9% | 90.5% | (many diffs) |
| 10 | mouse | 216705 | Clint1 | clathrin interactor 1 | XM_006532839.3 | 83.5% | 88% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1941
- ORF length:
- 1875
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GAACATGTGG AAGGTGCGCG AGCTGGTGGA CAAAGCCACC AATGTTGTTA 121 TGAATTATTC AGAGATCGAG TCTAAGGTTC GAGAGGCAAC GAACGATGAT CCTTGGGGAC 181 CTTCTGGGCA ACTCATGGGA GAGATTGCCA AGGCTACATT TATGTATGAA CAATTTCCAG 241 AACTTATGAA CATGCTTTGG TCACGAATGT TAAAAGACAA CAAAAAGAAT TGGAGAAGAG 301 TTTATAAGTC GTTGCTGCTC CTAGCTTACC TCATAAGGAA TGGATCAGAG CGTGTTGTTA 361 CAAGTGCCAG AGAACACATT TATGATTTAC GATCCCTGGA AAATTACCAC TTTGTAGATG 421 AGCATGGTAA GGATCAAGGT ATAAATATTC GACAGAAGGT GAAGGAATTG GTTGAATTTG 481 CCCAGGATGA CGACAGGCTT CGTGAAGAGC GAAAGAAAGC AAAGAAGAAC AAAGACAAGT 541 ATGTTGGGGT TTCCTCAGAC AGTGTTGGAG GATTCAGATA CAGTGAAAGA TATGATCCTG 601 AGCCCAAATC AAAATGGGAT GAGGAGTGGG ATAAAAACAA GAGTGCTTTT CCATTCAGTG 661 ATAAATTAGG TGAGCTGAGT GATAAAATTG GAAGCACAAT TGATGACACC ATCAGCAAGT 721 TCCGGAGGAA AGATAGAGAA GACTCTCCAG AAAGATGCAG CGACAGCGAT GAGGAAAAGA 781 AAGCGAGAAG AGGCAGATCT CCCAAAGGTG AATTCAAAGA TGAAGAGGAG ACTGTGACGA 841 CAAAGCATAT TCATATCACA CAGGCCACAG AGACCACCAC AACCAGACAC AAGCGCACAG 901 CAAATCCTTC CAAAACCATT GATCTTGGAG CAGCAGCACA TTACACAGGG GACAAAGCAA 961 GTCCAGATCA GAATGCTTCA ACCCACACAC CTCAGTCTTC AGTTAAGACT TCAGTGCCTA 1021 GCAGCAAGTC ATCTGGTGAC CTTGTTGATC TGTTTGATGG CACCAGCCAG TCAACAGGAG 1081 GATCAGCTGA TTTATTCGGA GGATTTGCTG ACTTTGGCTC AGCTGCTGCA TCAGGCAGTT 1141 TCCCTTCCCA AGTAACAGCA ACAAGTGGGA ATGGAGACTT TGGTGACTGG AGTGCCTTCA 1201 ACCAAGCCCC ATCAGGCCCT GTTGCTTCCA GTGGCGAGTT CTTTGGCAGT GCCTCACAGC 1261 CAGCGGTAGA ACTTGTTAGT GGCTCACAAT CAGCTCTAGG CCCACCTCCT GCTGCCTCAA 1321 ATTCTTCAGA CCTGTTTGAT CTTATGGGCT CGTCCCAGGC AACCATGACA TCTTCCCAGA 1381 GTATGAATTT CTCTATGATG AGCACTAACA CTGTGGGACT TGGTTTGCCT ATGTCAAGAT 1441 CACAGAATAC AGATATGGTC CAGAAATCAG TCAGCAAAAC CTTGCCCTCT ACTTGGTCTG 1501 ACCCCAGTGT AAACATCAGC CTAGACAACT TACTACCTGG TATGCAGCCT TCCAAACCCC 1561 AGCAGCCATC ACTGAATACA ATGATTCAGC AACAGAATAT GCAGCAGCCT ATGAATGTGA 1621 TGACTCAAAG TTTTGGAGCT GTGAACCTCA GTTCTCCATC GAACATGCTT CCTGTCCGGC 1681 CCCAAACTAA TGCTTTGATA GGGGGACCCA TGCCTATGAG CATGCCCAAT GTGATGACTG 1741 GCACCATGGG AATGGCCCCT CTTGGAAATA CTCCGATGAT GAACCAGAGC ATGATGGGCA 1801 TGAACATGAA CATAGGGATG TCCGCTGCTG GGATGGGCTT GACAGGCACA ATGGGAATGG 1861 GCATGCCCAA CATAGCCATG ACTTCTGGAA CTGTGCAACC CAAGCAAGAT GCCTTTGCAA 1921 ATTTCGCCAA TTTTAGCAAA TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1981 attgcttatc aatttgttgc aacgaac