Construct: ORF ccsbBroadEn_02302

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004030.1_s300c1, BRDN0000392551
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCAMP2 (10066)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10066 SCAMP2 secretory carrier membrane ... NM_005697.5 100% 100%
2 human 10066 SCAMP2 secretory carrier membrane ... NM_001320778.2 88.4% 88.4% 224_352del
3 human 10066 SCAMP2 secretory carrier membrane ... XM_017021856.1 81.8% 79% (many diffs)
4 mouse 24044 Scamp2 secretory carrier membrane ... NM_022813.3 86.7% 88.7% (many diffs)
5 mouse 24044 Scamp2 secretory carrier membrane ... XM_006511152.2 77% 78.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1053
ORF length:
987
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGCTTTCGAC ACCAACCCCT TCGCGGACCC AGTGGATGTA AACCCCTTCC
121AGGATCCCTC TGTGACCCAG CTGACCAACG CCCCGCAGGG CGGCCTGGCG GAATTCAACC
181CCTTCTCAGA GACAAATGCA GCGACAACAG TTCCTGTCAC CCAACTCCCT GGGTCCTCAC
241AGCCAGCGGT TCTCCAGCCA TCAGTGGAAC CAACCCAGCC GACCCCCCAG GCCGTGGTGT
301CTGCAGCCCA GGCAGGCCTG CTCCGGCAGC AGGAAGAACT GGACAGGAAA GCTGCCGAGC
361TGGAACGCAA GGAGCGGGAG CTGCAGAACA CTGTAGCCAA CTTGCATGTG AGACAGAACA
421ACTGGCCCCC TCTGCCCTCG TGGTGCCCTG TGAAGCCCTG CTTCTATCAG GATTTCTCCA
481CAGAGATCCC TGCCGACTAC CAGCGGATAT GCAAGATGCT CTACTATCTG TGGATGTTGC
541ATTCAGTGAC TCTGTTTCTG AACCTGCTTG CCTGCCTGGC CTGGTTCTCG GGCAACAGCT
601CCAAGGGAGT GGACTTTGGC CTCTCCATCC TGTGGTTTCT GATCTTCACT CCCTGTGCCT
661TCCTTTGTTG GTACCGACCC ATCTATAAGG CCTTTAGGTC CGACAACTCT TTCAGCTTCT
721TTGTGTTCTT CTTTGTATTT TTTTGTCAAA TAGGGATCTA CATCATCCAG TTGGTTGGCA
781TCCCTGGCCT GGGGGACAGC GGTTGGATTG CAGCCCTGTC TACACTGGAT AATCATTCCC
841TGGCCATATC AGTCATCATG ATGGTGGTGG CTGGCTTCTT CACCCTCTGT GCCGTGCTCT
901CAGTCTTCCT CCTGCAGCGG GTGCACTCCC TCTACCGACG GACAGGGGCC AGCTTCCAGC
961AGGCCCAGGA GGAGTTTTCC CAGGGCATCT TCAGCAGCAG AACCTTCCAC AGAGCTGCTT
1021CATCTGCTGC CCAAGGAGCC TTCCAGGGGA ATTACCCAAC TTTCTTGTAC AAAGTtggca
1081ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)