Construct: ORF ccsbBroadEn_02305

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011315.1_s300c1, BRDN0000398210
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GPC6 (10082)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10082 GPC6 glypican 6 NM_005708.5 100% 100%
2 human 10082 GPC6 glypican 6 XM_011521044.2 87.3% 87.3% 0_1ins210
3 human 10082 GPC6 glypican 6 XM_017020298.1 87.3% 87.3% 0_1ins210
4 human 10082 GPC6 glypican 6 XM_017020299.2 87.3% 87.3% 0_1ins210
5 human 10082 GPC6 glypican 6 XM_017020300.1 87.3% 87.3% 0_1ins210
6 human 10082 GPC6 glypican 6 XM_017020301.1 78% 78% 0_1ins366
7 human 10082 GPC6 glypican 6 XM_017020302.1 54.1% 49.8% (many diffs)
8 mouse 23888 Gpc6 glypican 6 NM_011821.3 88.5% 96.7% (many diffs)
9 mouse 23888 Gpc6 glypican 6 NM_001079844.2 86.9% 95% (many diffs)
10 mouse 23888 Gpc6 glypican 6 XM_006518929.3 48.9% 52.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1734
ORF length:
1665
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCTTCTTGG ATCGGGGCTG TGATTCTTCC CCTCTTGGGG CTGCTGCTCT
121CCCTCCCCGC CGGGGCGGAT GTGAAGGCTC GGAGCTGCGG AGAGGTCCGC CAGGCGTACG
181GTGCCAAGGG ATTCAGCCTG GCGGACATCC CCTACCAGGA GATCGCAGGG GAACACTTAA
241GAATCTGTCC TCAGGAATAT ACATGCTGCA CCACAGAAAT GGAAGACAAG TTAAGCCAAC
301AAAGCAAACT CGAATTTGAA AACCTTGTGG AAGAGACAAG CCATTTTGTG CGCACCACTT
361TTGTGTCCAG GCATAAGAAA TTTGACGAAT TTTTCCGAGA GCTCCTGGAG AATGCAGAAA
421AGTCACTAAA TGATATGTTT GTACGGACCT ATGGCATGCT GTACATGCAG AATTCAGAAG
481TCTTCCAGGA CCTCTTCACA GAGCTGAAAA GGTACTACAC TGGGGGTAAT GTGAATCTGG
541AGGAAATGCT CAATGACTTT TGGGCTCGGC TCCTGGAACG GATGTTTCAG CTGATAAACC
601CTCAGTATCA CTTCAGTGAA GACTACCTGG AATGTGTGAG CAAATACACT GACCAGCTCA
661AGCCATTTGG AGACGTGCCC CGGAAACTGA AGATTCAGGT TACCCGCGCC TTCATTGCTG
721CCAGGACCTT TGTCCAGGGG CTGACTGTGG GCAGAGAAGT TGCAAACCGA GTTTCCAAGG
781TCAGCCCAAC CCCAGGGTGT ATCCGTGCCC TCATGAAGAT GCTGTACTGC CCATACTGTC
841GGGGGCTTCC CACTGTGAGG CCCTGCAACA ACTACTGTCT CAACGTCATG AAGGGCTGCT
901TGGCAAATCA GGCTGACCTC GACACAGAGT GGAATCTGTT TATAGATGCA ATGCTCTTGG
961TGGCAGAGCG ACTGGAGGGG CCATTCAACA TTGAGTCGGT CATGGACCCG ATAGATGTCA
1021AGATTTCTGA AGCCATTATG AACATGCAAG AAAACAGCAT GCAGGTGTCT GCAAAGGTCT
1081TTCAGGGATG TGGTCAGCCC AAACCTGCTC CAGCCCTCAG ATCTGCCCGC TCAGCTCCTG
1141AAAATTTTAA TACACGTTTC AGGCCCTACA ATCCTGAGGA AAGACCAACA ACTGCTGCAG
1201GCACAAGCTT GGACCGGCTG GTCACAGACA TAAAAGAGAA ATTGAAGCTC TCTAAAAAGG
1261TCTGGTCAGC ATTACCCTAC ACTATCTGCA AGGACGAGAG CGTGACAGCG GGCACGTCCA
1321ACGAGGAGGA ATGCTGGAAC GGGCACAGCA AAGCCAGATA CTTGCCTGAG ATCATGAATG
1381ATGGGCTCAC CAACCAGATC AACAATCCCG AGGTGGATGT GGACATCACT CGGCCTGACA
1441CTTTCATCAG ACAGCAGATT ATGGCTCTCC GTGTGATGAC CAACAAACTA AAAAACGCCT
1501ACAATGGCAA TGATGTCAAT TTCCAGGACA CAAGTGATGA ATCCAGTGGC TCAGGGAGTG
1561GCAGTGGGTG CATGGATGAC GTGTGTCCCA CGGAGTTTGA GTTTGTCACC ACAGAGGCCC
1621CCGCAGTGGA TCCCGACCGG AGAGAGGTGG ACTCTTCTGC AGCCCAGCGT GGCCACTCCC
1681TGCTCTCCTG GTCTCTCACC TGCATTGTCC TGGCACTGCA GAGACTGTGC AGATTGCCAA
1741CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)