Construct: ORF ccsbBroadEn_02348

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011694.1_s300c1, BRDN0000385974
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSME3 (10197)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10197 PSME3 proteasome activator subunit 3 NM_005789.4 100% 100%
2 human 10197 PSME3 proteasome activator subunit 3 NM_176863.3 95.1% 95.1% 405_443del
3 human 10197 PSME3 proteasome activator subunit 3 NM_001267045.2 93.6% 89.6% (many diffs)
4 human 10197 PSME3 proteasome activator subunit 3 NM_001330229.2 75.9% 75.9% 0_1ins183
5 human 10197 PSME3 proteasome activator subunit 3 NR_049772.2 20.3% 1_235del;526_527ins113;885_3069del
6 mouse 19192 Psme3 proteaseome (prosome, macro... NM_011192.3 94% 100% (many diffs)
7 mouse 19192 Psme3 proteaseome (prosome, macro... XM_006532525.3 87% 91.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
828
ORF length:
762
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CTCGTTGCTG AAGGTGGATC AGGAAGTGAA GCTCAAGGTT GATTCTTTCA
121GGGAGCGGAT CACAAGTGAG GCAGAAGACT TGGTGGCAAA TTTTTTCCCA AAGAAGTTAT
181TAGAACTTGA TAGTTTTCTG AAGGAACCAA TCTTAAACAT CCATGACCTA ACTCAGATCC
241ACTCTGACAT GAATCTCCCA GTCCCTGACC CCATTCTTCT CACCAATAGC CATGATGGAC
301TGGATGGTCC CACTTATAAG AAGCGAAGGT TGGATGAGTG TGAAGAAGCC TTCCAAGGAA
361CCAAGGTGTT TGTGATGCCC AATGGGATGC TGAAAAGCAA CCAGCAGCTG GTGGACATTA
421TTGAGAAAGT GAAACCTGAG ATCCGGCTGT TGATTGAGAA ATGTAACACG GTCAAAATGT
481GGGTACAGCT CCTGATTCCC AGGATAGAAG ATGGAAACAA CTTTGGGGTG TCCATTCAGG
541AGGAAACAGT TGCAGAGCTA AGAACTGTTG AGAGTGAAGC TGCATCTTAT CTGGACCAGA
601TTTCTAGATA TTATATTACA AGAGCCAAAT TGGTTTCTAA AATAGCTAAA TATCCCCATG
661TGGAGGACTA TCGCCGCACC GTGACAGAGA TTGATGAGAA AGAATATATC AGCCTTCGGC
721TCATCATATC AGAGCTGAGG AATCAATATG TCACTCTACA TGACATGATC CTGAAAAATA
781TCGAGAAGAT CAAACGGCCC CGGAGCAGCA ATGCAGAGAC TCTGTACTGC CCAACTTTCT
841TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)