Transcript: Human NM_005789.4

Homo sapiens proteasome activator subunit 3 (PSME3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
PSME3 (10197)
Length:
3182
CDS:
236..1000

Additional Resources:

NCBI RefSeq record:
NM_005789.4
NBCI Gene record:
PSME3 (10197)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005789.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000058071 GAGAAATGTAACACGGTCAAA pLKO.1 626 CDS 100% 4.950 6.930 N PSME3 n/a
2 TRCN0000296473 ACACCCAACCTGTCGTAATTT pLKO_005 1218 3UTR 100% 15.000 10.500 N PSME3 n/a
3 TRCN0000296521 ACTGGATGGTCCCACTTATAA pLKO_005 469 CDS 100% 15.000 10.500 N PSME3 n/a
4 TRCN0000066562 AGAGCCAAATTGGTTTCTAAA pLKO.1 791 CDS 100% 13.200 9.240 N Psme3 n/a
5 TRCN0000335594 AGAGCCAAATTGGTTTCTAAA pLKO_005 791 CDS 100% 13.200 9.240 N Psme3 n/a
6 TRCN0000066559 GCAGAAGACTTGGTGGCAAAT pLKO.1 311 CDS 100% 10.800 7.560 N Psme3 n/a
7 TRCN0000335512 GCAGAAGACTTGGTGGCAAAT pLKO_005 311 CDS 100% 10.800 7.560 N Psme3 n/a
8 TRCN0000058070 CGAAGGTTGGATGAGTGTGAA pLKO.1 494 CDS 100% 4.950 3.465 N PSME3 n/a
9 TRCN0000307160 CGAAGGTTGGATGAGTGTGAA pLKO_005 494 CDS 100% 4.950 3.465 N PSME3 n/a
10 TRCN0000058069 CGTGACAGAGATTGATGAGAA pLKO.1 850 CDS 100% 4.950 3.465 N PSME3 n/a
11 TRCN0000290094 CGTGACAGAGATTGATGAGAA pLKO_005 850 CDS 100% 4.950 3.465 N PSME3 n/a
12 TRCN0000058068 GCATCTTATCTGGACCAGATT pLKO.1 752 CDS 100% 4.950 3.465 N PSME3 n/a
13 TRCN0000290025 GCATCTTATCTGGACCAGATT pLKO_005 752 CDS 100% 4.950 3.465 N PSME3 n/a
14 TRCN0000058072 GAACCAATCTTAAACATCCAT pLKO.1 374 CDS 100% 3.000 2.100 N PSME3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005789.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02348 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02348 pLX_304 0% 100% 100% V5 n/a
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