Construct: ORF ccsbBroadEn_02352
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016850.1_s300c1, BRDN0000391874
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NUTF2 (10204)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10204 | NUTF2 | nuclear transport factor 2 | NM_001322038.2 | 100% | 100% | |
| 2 | human | 10204 | NUTF2 | nuclear transport factor 2 | NM_001322039.2 | 100% | 100% | |
| 3 | human | 10204 | NUTF2 | nuclear transport factor 2 | NM_001322040.2 | 100% | 100% | |
| 4 | human | 10204 | NUTF2 | nuclear transport factor 2 | NM_001322041.2 | 100% | 100% | |
| 5 | human | 10204 | NUTF2 | nuclear transport factor 2 | NM_005796.3 | 100% | 100% | |
| 6 | mouse | 68051 | Nutf2 | nuclear transport factor 2 | NM_026532.3 | 94.2% | 100% | (many diffs) |
| 7 | mouse | 68051 | Nutf2 | nuclear transport factor 2 | XM_006531325.3 | 94.2% | 100% | (many diffs) |
| 8 | mouse | 621832 | Nutf2-ps2 | nuclear transport factor 2,... | XM_001473957.5 | 93.9% | 100% | (many diffs) |
| 9 | mouse | 100043462 | Nutf2-ps1 | nuclear transport factor 2,... | NR_033574.1 | 39.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 447
- ORF length:
- 381
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG AGACAAGCCA ATTTGGGAGC AGATTGGATC CAGCTTCATT CAACATTACT 121 ACCAGTTATT TGATAATGAT AGAACCCAAC TAGGCGCAAT TTACATTGAC GCGTCATGCC 181 TTACGTGGGA AGGACAACAG TTCCAGGGGA AAGCTGCCAT TGTGGAGAAG TTGTCTAGCC 241 TTCCGTTCCA GAAAATTCAG CACAGCATCA CCGCGCAGGA CCATCAGCCC ACTCCAGATA 301 GCTGCATCAT CAGCATGGTT GTGGGCCAGC TTAAGGCGGA TGAAGACCCC ATCATGGGGT 361 TCCACCAGAT GTTCCTATTA AAGAACATCA ACGATGCTTG GGTTTGCACC AATGACATGT 421 TCAGGCTCGC CCTGCACAAC TTTGGCTGCC CAACTTTCTT GTACAAAGTt ggcattataa 481 gaaagcattg cttatcaatt tgttgcaacg aac