Transcript: Mouse XM_006532323.3

PREDICTED: Mus musculus kinesin family member 1C (Kif1c), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Kif1c (16562)
Length:
2368
CDS:
596..2308

Additional Resources:

NCBI RefSeq record:
XM_006532323.3
NBCI Gene record:
Kif1c (16562)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006532323.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430725 AGTGAGGGTTCGGCCCTTTAA pLKO_005 622 CDS 100% 13.200 18.480 N KIF1C n/a
2 TRCN0000090744 GCCGTCTTTACTATTGTCTTT pLKO.1 1250 CDS 100% 4.950 6.930 N Kif1c n/a
3 TRCN0000116590 CCTCATGGACTGTGGAAATAA pLKO.1 1177 CDS 100% 15.000 10.500 N KIF1C n/a
4 TRCN0000090743 CCGTCTTTACTATTGTCTTTA pLKO.1 1251 CDS 100% 13.200 9.240 N Kif1c n/a
5 TRCN0000375167 CTCTGCTCTAGGAGGTCTAAA pLKO_005 1747 CDS 100% 13.200 9.240 N Kif1c n/a
6 TRCN0000313768 TTCAGTAGAGGTGAGCTATAT pLKO_005 1015 CDS 100% 13.200 9.240 N Kif1c n/a
7 TRCN0000313769 ACTCTCGCACAGCAATGATTG pLKO_005 1542 CDS 100% 10.800 7.560 N Kif1c n/a
8 TRCN0000090746 GTGAGCTATATGGAAATCTAT pLKO.1 1025 CDS 100% 5.625 3.938 N Kif1c n/a
9 TRCN0000090747 CCCTTGATGTCTGAATGTCTT pLKO.1 2117 CDS 100% 4.950 3.465 N Kif1c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006532323.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02519 pDONR223 100% 45.2% 48.8% None (many diffs) n/a
2 ccsbBroad304_02519 pLX_304 0% 45.2% 48.8% V5 (many diffs) n/a
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