Construct: ORF ccsbBroadEn_02605
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002487.1_s300c1, BRDN0000398236
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TENT4A (11044)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11044 | TENT4A | terminal nucleotidyltransfe... | XM_024454343.1 | 100% | 100% | |
| 2 | human | 11044 | TENT4A | terminal nucleotidyltransfe... | XM_017008988.2 | 98.3% | 98.3% | 0_1ins27 |
| 3 | human | 11044 | TENT4A | terminal nucleotidyltransfe... | XM_017008989.2 | 98.3% | 98.3% | 0_1ins27 |
| 4 | human | 11044 | TENT4A | terminal nucleotidyltransfe... | XM_011513945.1 | 92% | 92% | 364_365ins129 |
| 5 | human | 11044 | TENT4A | terminal nucleotidyltransfe... | NM_006999.6 | 68.4% | 68.4% | 1_750del |
| 6 | human | 11044 | TENT4A | terminal nucleotidyltransfe... | NM_001171805.3 | 68.3% | 68.3% | 1_750del;2182_2183insAGC |
| 7 | human | 11044 | TENT4A | terminal nucleotidyltransfe... | XM_017008990.1 | 66.7% | 66.7% | 0_1ins540 |
| 8 | mouse | 210106 | Papd7 | PAP associated domain conta... | NM_198600.2 | 86.8% | 94.8% | (many diffs) |
| 9 | mouse | 210106 | Papd7 | PAP associated domain conta... | NM_001169131.1 | 86.6% | 94.6% | (many diffs) |
| 10 | mouse | 210106 | Papd7 | PAP associated domain conta... | XM_006517185.1 | 60% | 65.4% | (many diffs) |
| 11 | mouse | 210106 | Papd7 | PAP associated domain conta... | XM_006517186.1 | 59.8% | 65.3% | (many diffs) |
| 12 | mouse | 210106 | Papd7 | PAP associated domain conta... | XM_006517187.1 | 54.4% | 59.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1695
- ORF length:
- 1626
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCCCCTTGT CCTGAAGAAG CAGCTATGAG AAGAGAGGTG GTGAAACGGA 121 TCGAAACTGT GGTGAAAGAC CTTTGGCCGA CGGCTGATGT ACAGATATTT GGCAGCTTTA 181 GTACAGGTCT TTATCTTCCA ACTAGCGACA TAGACCTGGT GGTCTTCGGG AAATGGGAGC 241 GTCCTCCTTT ACAGCTGCTG GAGCAAGCCC TGCGGAAGCA CAACGTGGCT GAGCCGTGTT 301 CCATCAAAGT CCTTGACAAG GCTACGGTAC CAATAATAAA GCTCACAGAT CAGGAGACTG 361 AAGTGAAAGT TGACATCAGC TTTAACATGG AGACGGGCGT CCGGGCAGCG GAGTTCATCA 421 AGAATTACAT GAAGAAATAT TCATTGCTGC CTTACTTGAT TTTAGTATTG AAACAGTTCC 481 TTCTGCAGAG GGACCTGAAT GAAGTTTTTA CAGGTGGAAT TAGCTCATAC AGCCTAATTT 541 TAATGGCCAT TAGCTTTCTA CAGTTGCATC CAAGAATTGA TGCCCGGAGA GCTGATGAAA 601 ACCTTGGAAT GCTTCTTGTA GAATTTTTTG AACTCTATGG GAGAAATTTT AATTACTTGA 661 AAACCGGTAT TAGAATCAAA GAAGGAGGTG CCTATATCGC CAAAGAGGAG ATCATGAAAG 721 CCATGACCAG CGGGTACAGA CCGTCGATGC TGTGCATTGA GGACCCCCTG CTGCCAGGGA 781 ATGACGTTGG CCGGAGCTCC TATGGCGCCA TGCAGGTGAA GCAGGTCTTC GATTATGCCT 841 ACATAGTGCT CAGCCATGCT GTGTCACCGC TGGCCAGGTC CTATCCAAAC AGAGACGCCG 901 AAAGTACTTT AGGAAGAATC ATCAAAGTAA CTCAGGAGGT GATTGACTAC CGGAGGTGGA 961 TCAAAGAGAA GTGGGGCAGC AAAGCCCACC CGTCGCCAGG CATGGACAGC AGGATCAAGA 1021 TCAAAGAGCG AATAGCCACA TGCAATGGGG AGCAGACGCA GAACCGAGAG CCCGAGTCTC 1081 CCTATGGCCA GCGCTTGACT TTGTCGCTGT CCAGCCCCCA GCTCCTGTCT TCAGGCTCCT 1141 CGGCCTCTTC TGTGTCTTCA CTTTCTGGGA GTGACGTTGA TTCAGACACA CCGCCCTGCA 1201 CAACGCCCAG TGTTTACCAG TTCAGTCTGC AAGCGCCAGC TCCTCTCATG GCCGGCTTAC 1261 CCACCGCCTT GCCAATGCCC AGTGGCAAAC CTCAGCCCAC CACTTCCAGA ACACTGATCA 1321 TGACAACCAA CAATCAGACC AGGTTTACTA TACCTCCACC GACCCTAGGG GTTGCTCCTG 1381 TTCCTTGCAG ACAAGCTGGT GTAGAAGGAA CTGCGTCTTT GAAAGCCGTC CACCACATGT 1441 CTTCCCCGGC CATTCCCTCA GCGTCCCCCA ACCCGCTCTC GAGCCCTCAT CTGTATCATA 1501 AGCAGCACAA CGGCATGAAA CTGTCCATGA AGGGCTCTCA CGGCCACACC CAAGGCGGCG 1561 GCTACAGCTC TGTGGGTAGC GGAGGTGTGC GGCCCCCTGT GGGCAACAGG GGACACCACC 1621 AGTATAACCG CACCGGCTGG AGGAGGAAAA AACACACACA CACACGGGAC AGTCTGCCCG 1681 TGAGCCTCAG CAGATTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1741 tatcaatttg ttgcaacgaa c