Construct: ORF ccsbBroadEn_02633
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018331.1_s300c1, BRDN0000384938
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LSM6 (11157)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11157 | LSM6 | LSM6 homolog, U6 small nucl... | NM_007080.3 | 100% | 100% | |
| 2 | human | 11157 | LSM6 | LSM6 homolog, U6 small nucl... | XM_017007672.1 | 100% | 100% | |
| 3 | human | 11157 | LSM6 | LSM6 homolog, U6 small nucl... | XM_017007673.1 | 100% | 100% | |
| 4 | human | 11157 | LSM6 | LSM6 homolog, U6 small nucl... | XR_001741098.1 | 27.4% | 1_119del;360_874del | |
| 5 | human | 11157 | LSM6 | LSM6 homolog, U6 small nucl... | XR_001741100.1 | 8.6% | 1_119del;360_2771del | |
| 6 | human | 11157 | LSM6 | LSM6 homolog, U6 small nucl... | XR_001741099.1 | 8.4% | 1_119del;360_2830del | |
| 7 | mouse | 78651 | Lsm6 | LSM6 homolog, U6 small nucl... | NM_001191004.1 | 92% | 100% | (many diffs) |
| 8 | mouse | 78651 | Lsm6 | LSM6 homolog, U6 small nucl... | NM_030145.3 | 92% | 100% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 306
- ORF length:
- 240
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TCTTCGGAAG CAAACCCCTA GTGACTTCTT AAAGCAAATC ATCGGACGAC 121 CAGTTGTGGT AAAATTAAAT TCTGGAGTGG ATTATCGAGG GGTCCTGGCT TGCCTGGATG 181 GCTACATGAA TATAGCCCTG GAGCAGACAG AAGAATATGT AAATGGACAA CTGAAGAATA 241 AGTATGGGGA TGCATTTATC CGAGGAAACA ATGTGTTGTA CATCAGTACA CAGAAGAGAC 301 GGATGTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 361 gttgcaacga ac