Transcript: Human XM_017007672.1

PREDICTED: Homo sapiens LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated (LSM6), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LSM6 (11157)
Length:
752
CDS:
115..357

Additional Resources:

NCBI RefSeq record:
XM_017007672.1
NBCI Gene record:
LSM6 (11157)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017007672.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000074721 CGGACGACCAGTTGTGGTAAA pLKO.1 162 CDS 100% 10.800 15.120 N LSM6 n/a
2 TRCN0000187052 CTGGATGGCTACATGAATATA pLKO.1 223 CDS 100% 15.000 10.500 N Gm10043 n/a
3 TRCN0000421720 GTCAGTGTACAGAATGCTAAA pLKO_005 570 3UTR 100% 10.800 7.560 N LSM6 n/a
4 TRCN0000413312 GTTCTTTCACTTGTAAGTTTC pLKO_005 527 3UTR 100% 10.800 7.560 N LSM6 n/a
5 TRCN0000074719 CCGAGGAAACAATGTGTTGTA pLKO.1 309 CDS 100% 4.950 3.465 N LSM6 n/a
6 TRCN0000074718 GTGATACAATTTGTCCTCTTT pLKO.1 432 3UTR 100% 4.950 3.465 N LSM6 n/a
7 TRCN0000074722 CATGAATATAGCCCTGGAGCA pLKO.1 234 CDS 100% 2.160 1.512 N LSM6 n/a
8 TRCN0000414709 AGAATATGTAAATGGACAACT pLKO_005 261 CDS 100% 4.950 2.970 N LSM6 n/a
9 TRCN0000074720 CAGTACACAGAAGAGACGGAT pLKO.1 333 CDS 100% 2.640 1.584 N LSM6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017007672.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02633 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02633 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473537 AGCGTGGCTAAGTCTAATTGTTAA pLX_317 100% 100% 100% V5 n/a
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