Construct: ORF ccsbBroadEn_02640
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002256.1_s300c1, BRDN0000391909
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM107A (11170)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11170 | FAM107A | family with sequence simila... | NM_001076778.3 | 100% | 100% | |
| 2 | human | 11170 | FAM107A | family with sequence simila... | NM_007177.4 | 100% | 100% | |
| 3 | human | 11170 | FAM107A | family with sequence simila... | NM_001282713.2 | 83.7% | 83.7% | 1_84del |
| 4 | human | 11170 | FAM107A | family with sequence simila... | NM_001282714.2 | 82.2% | 82.2% | 1_93del |
| 5 | mouse | 268709 | Fam107a | family with sequence simila... | NM_183187.3 | 86.3% | 90.9% | (many diffs) |
| 6 | mouse | 268709 | Fam107a | family with sequence simila... | XM_006518020.2 | 86.3% | 90.9% | (many diffs) |
| 7 | mouse | 268709 | Fam107a | family with sequence simila... | XM_006518021.2 | 86.3% | 90.9% | (many diffs) |
| 8 | mouse | 268709 | Fam107a | family with sequence simila... | XM_006518022.2 | 86.3% | 90.9% | (many diffs) |
| 9 | mouse | 268709 | Fam107a | family with sequence simila... | XM_006518023.2 | 86.3% | 90.9% | (many diffs) |
| 10 | mouse | 268709 | Fam107a | family with sequence simila... | XM_006518019.2 | 50.1% | 52.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 498
- ORF length:
- 432
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTA CTCGGAGATC CAGAGGGAGC GGGCAGACAT TGGGGGCCTG ATGGCCCGGC 121 CAGAATACAG AGAGTGGAAT CCGGAGCTCA TCAAGCCCAA GAAGCTGCTG AACCCCGTGA 181 AGGCCTCTCG GAGTCACCAG GAGCTCCACC GGGAGCTGCT CATGAACCAC AGAAGGGGCC 241 TTGGTGTGGA CAGCAAGCCA GAGCTGCAGC GTGTCCTAGA GCACCGCCGG CGGAACCAGC 301 TCATCAAGAA GAAGAAGGAG GAGCTGGAAG CCAAGCGGCT GCAGTGCCCC TTTGAGCAGG 361 AGCTGCTGAG ACGGCAGCAG AGGCTGAACC AGCTGGAAAA ACCACCAGAG AAGGAAGAGG 421 ATCACGCCCC CGAGTTTATT AAAGTCAGGG AAAACCTGCG GAGAATTGCC ACACTGACCA 481 GCGAAGAGAG AGAGCTGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 541 gcttatcaat ttgttgcaac gaac