Construct: ORF ccsbBroadEn_02674

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007352.1_s300c1, BRDN0000389647
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STK38 (11329)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11329 STK38 serine/threonine kinase 38 NM_001305102.2 100% 100%
2 human 11329 STK38 serine/threonine kinase 38 NM_007271.4 100% 100%
3 human 11329 STK38 serine/threonine kinase 38 XM_006714988.4 100% 100%
4 human 11329 STK38 serine/threonine kinase 38 XM_006714989.4 100% 100%
5 human 11329 STK38 serine/threonine kinase 38 XM_017010226.1 93% 90.8% (many diffs)
6 human 11329 STK38 serine/threonine kinase 38 XR_001743146.1 35.6% 1_292del;1126_1127ins118;1570_3467del
7 mouse 106504 Stk38 serine/threonine kinase 38 NM_134115.2 92.8% 98.7% (many diffs)
8 mouse 106504 Stk38 serine/threonine kinase 38 XM_011246232.2 82.2% 87.7% (many diffs)
9 mouse 106504 Stk38 serine/threonine kinase 38 XM_011246233.2 82.2% 87.7% (many diffs)
10 mouse 106504 Stk38 serine/threonine kinase 38 XM_006523386.2 78.7% 83.7% (many diffs)
11 mouse 106504 Stk38 serine/threonine kinase 38 XM_006523385.2 78.6% 83.6% (many diffs)
12 mouse 106504 Stk38 serine/threonine kinase 38 XM_017317194.1 57.9% 61.5% (many diffs)
13 mouse 106504 Stk38 serine/threonine kinase 38 XM_017317192.1 44.3% 41.6% (many diffs)
14 mouse 106504 Stk38 serine/threonine kinase 38 XM_017317193.1 34.4% 32.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1461
ORF length:
1395
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AATGACAGGC TCAACACCTT GCTCATCCAT GAGTAACCAC ACAAAGGAAA
121GGGTGACAAT GACCAAAGTG ACACTGGAGA ATTTTTATAG CAACCTTATC GCTCAACATG
181AAGAACGAGA AATGAGACAA AAGAAGTTAG AAAAGGTGAT GGAAGAAGAA GGCCTAAAAG
241ATGAGGAGAA ACGACTCCGG AGATCAGCAC ATGCTCGGAA GGAAACAGAG TTTCTTCGTT
301TGAAGAGAAC AAGACTTGGA TTGGAAGATT TTGAGTCCTT AAAAGTAATA GGCAGAGGAG
361CATTTGGTGA GGTACGGCTT GTTCAGAAGA AAGATACGGG ACATGTGTAT GCAATGAAAA
421TACTCCGTAA AGCAGATATG CTTGAAAAAG AGCAGGTTGG CCACATTCGT GCGGAGCGTG
481ACATTCTAGT GGAGGCAGAC AGTTTGTGGG TTGTGAAAAT GTTCTATAGT TTTCAGGATA
541AGCTAAACCT CTACCTAATC ATGGAGTTCC TGCCTGGAGG GGACATGATG ACCTTGTTGA
601TGAAAAAAGA CACTCTGACA GAAGAGGAGA CTCAGTTTTA TATAGCAGAA ACAGTATTAG
661CCATAGACTC TATTCACCAA CTTGGATTCA TCCACAGAGA CATCAAACCA GACAACCTTC
721TTTTGGACAG CAAGGGCCAT GTGAAACTTT CTGACTTTGG TCTTTGCACA GGACTGAAAA
781AAGCACATAG GACAGAATTT TATAGGAATC TGAACCACAG CCTCCCCAGT GATTTCACTT
841TCCAGAACAT GAATTCCAAA AGGAAAGCAG AAACCTGGAA AAGAAATAGA CGTCAGCTAG
901CCTTCTCCAC AGTAGGCACT CCTGACTACA TTGCTCCTGA GGTGTTCATG CAGACCGGGT
961ACAACAAGCT CTGTGATTGG TGGTCGCTTG GGGTGATCAT GTATGAGATG CTCATCGGCT
1021ACCCACCTTT CTGTTCTGAG ACCCCTCAAG AGACATATAA GAAGGTGATG AACTGGAAAG
1081AAACTTTGAC TTTTCCTCCA GAAGTTCCCA TCTCTGAGAA AGCCAAGGAT CTAATTTTGA
1141GGTTCTGCTG TGAATGGGAA CATAGAATTG GAGCTCCTGG AGTTGAGGAA ATAAAAAGTA
1201ACTCTTTTTT TGAAGGCGTT GACTGGGAAC ATATCAGAGA GAGACCTGCT GCAATATCTA
1261TTGAAATCAA AAGCATTGAT GATACCTCAA ACTTCGATGA GTTTCCAGAA TCTGATATTC
1321TTAAGCCAAC AGTGGCCACA AGTAATCATC CTGAGACTGA CTACAAGAAC AAAGACTGGG
1381TCTTCATCAA TTACACGTAC AAGCGCTTTG AGGGCCTGAC TGCAAGGGGG GCAATACCTT
1441CCTACATGAA AGCAGCAAAA TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1501attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)