Transcript: Human XM_006714988.4

PREDICTED: Homo sapiens serine/threonine kinase 38 (STK38), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STK38 (11329)
Length:
3403
CDS:
111..1508

Additional Resources:

NCBI RefSeq record:
XM_006714988.4
NBCI Gene record:
STK38 (11329)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006714988.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000280002 TCGTGTATAGTCATCGAATAT pLKO_005 1850 3UTR 100% 13.200 18.480 N STK38 n/a
2 TRCN0000022865 GCTAAACCTCTACCTAATCAT pLKO.1 587 CDS 100% 5.625 7.875 N Stk38 n/a
3 TRCN0000276706 GCTAAACCTCTACCTAATCAT pLKO_005 587 CDS 100% 5.625 7.875 N Stk38 n/a
4 TRCN0000197233 GCAACCTTATCGCTCAACATG pLKO.1 205 CDS 100% 4.950 6.930 N STK38 n/a
5 TRCN0000199774 GCCTGCAACTTAGGCGGATTG pLKO.1 2695 3UTR 100% 2.000 2.800 N STK38 n/a
6 TRCN0000010215 GCTCATCGGCTACCCACCTTT pLKO.1 1055 CDS 100% 1.650 2.310 N STK38 n/a
7 TRCN0000297754 GCTCATCGGCTACCCACCTTT pLKO_005 1055 CDS 100% 1.650 2.310 N STK38 n/a
8 TRCN0000196524 GTATTAGCCATAGACTCTATT pLKO.1 699 CDS 100% 13.200 10.560 N STK38 n/a
9 TRCN0000280037 GTATTAGCCATAGACTCTATT pLKO_005 699 CDS 100% 13.200 10.560 N STK38 n/a
10 TRCN0000194856 CTTCATCAATTACACGTACAA pLKO.1 1427 CDS 100% 4.950 3.960 N STK38 n/a
11 TRCN0000361905 TGCCAAGCCCACCAAGTATTT pLKO_005 1904 3UTR 100% 13.200 9.240 N Stk38 n/a
12 TRCN0000195165 CAACATGAAGAACGAGAAATG pLKO.1 219 CDS 100% 10.800 7.560 N STK38 n/a
13 TRCN0000285614 CAACATGAAGAACGAGAAATG pLKO_005 219 CDS 100% 10.800 7.560 N Stk38 n/a
14 TRCN0000195648 CTCCTGAAATGTGGTAGTAAG pLKO.1 1630 3UTR 100% 10.800 7.560 N STK38 n/a
15 TRCN0000196880 GAAACAGAGTTTCTTCGTTTG pLKO.1 327 CDS 100% 6.000 4.200 N STK38 n/a
16 TRCN0000022867 CGGAAGGAAACAGAGTTTCTT pLKO.1 321 CDS 100% 5.625 3.938 N Stk38 n/a
17 TRCN0000010216 GAGACTGACTACAAGAACAAA pLKO.1 1398 CDS 100% 5.625 3.938 N STK38 n/a
18 TRCN0000297282 GAGACTGACTACAAGAACAAA pLKO_005 1398 CDS 100% 5.625 3.938 N STK38 n/a
19 TRCN0000010214 CAGCAAGGGCCATGTGAAACT pLKO.1 773 CDS 100% 4.950 3.465 N STK38 n/a
20 TRCN0000280001 CAGCAAGGGCCATGTGAAACT pLKO_005 773 CDS 100% 4.950 3.465 N STK38 n/a
21 TRCN0000022866 GATACCTCAAACTTCGATGAA pLKO.1 1326 CDS 100% 4.950 3.465 N Stk38 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006714988.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02674 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02674 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478960 AATTAGCCCCCACTGATCTCTTTG pLX_317 28% 100% 100% V5 n/a
4 ccsbBroadEn_14993 pDONR223 0% 100% 100% None n/a
5 ccsbBroad304_14993 pLX_304 0% 100% 100% V5 n/a
6 TRCN0000489616 GAGTGCTCGCGCCTTACTATGATC pLX_317 23.5% 100% 100% V5 (not translated due to prior stop codon) n/a
Download CSV