Transcript: Human XR_001743146.1

PREDICTED: Homo sapiens serine/threonine kinase 38 (STK38), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STK38 (11329)
Length:
3467
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001743146.1
NBCI Gene record:
STK38 (11329)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001743146.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000280002 TCGTGTATAGTCATCGAATAT pLKO_005 1914 3UTR 100% 13.200 18.480 N STK38 n/a
2 TRCN0000022865 GCTAAACCTCTACCTAATCAT pLKO.1 769 3UTR 100% 5.625 7.875 N Stk38 n/a
3 TRCN0000276706 GCTAAACCTCTACCTAATCAT pLKO_005 769 3UTR 100% 5.625 7.875 N Stk38 n/a
4 TRCN0000197233 GCAACCTTATCGCTCAACATG pLKO.1 387 3UTR 100% 4.950 6.930 N STK38 n/a
5 TRCN0000199774 GCCTGCAACTTAGGCGGATTG pLKO.1 2759 3UTR 100% 2.000 2.800 N STK38 n/a
6 TRCN0000196524 GTATTAGCCATAGACTCTATT pLKO.1 881 3UTR 100% 13.200 10.560 N STK38 n/a
7 TRCN0000280037 GTATTAGCCATAGACTCTATT pLKO_005 881 3UTR 100% 13.200 10.560 N STK38 n/a
8 TRCN0000194856 CTTCATCAATTACACGTACAA pLKO.1 1491 3UTR 100% 4.950 3.960 N STK38 n/a
9 TRCN0000361905 TGCCAAGCCCACCAAGTATTT pLKO_005 1968 3UTR 100% 13.200 9.240 N Stk38 n/a
10 TRCN0000195165 CAACATGAAGAACGAGAAATG pLKO.1 401 3UTR 100% 10.800 7.560 N STK38 n/a
11 TRCN0000285614 CAACATGAAGAACGAGAAATG pLKO_005 401 3UTR 100% 10.800 7.560 N Stk38 n/a
12 TRCN0000195648 CTCCTGAAATGTGGTAGTAAG pLKO.1 1694 3UTR 100% 10.800 7.560 N STK38 n/a
13 TRCN0000196880 GAAACAGAGTTTCTTCGTTTG pLKO.1 509 3UTR 100% 6.000 4.200 N STK38 n/a
14 TRCN0000022867 CGGAAGGAAACAGAGTTTCTT pLKO.1 503 3UTR 100% 5.625 3.938 N Stk38 n/a
15 TRCN0000010216 GAGACTGACTACAAGAACAAA pLKO.1 1462 3UTR 100% 5.625 3.938 N STK38 n/a
16 TRCN0000297282 GAGACTGACTACAAGAACAAA pLKO_005 1462 3UTR 100% 5.625 3.938 N STK38 n/a
17 TRCN0000010214 CAGCAAGGGCCATGTGAAACT pLKO.1 955 3UTR 100% 4.950 3.465 N STK38 n/a
18 TRCN0000280001 CAGCAAGGGCCATGTGAAACT pLKO_005 955 3UTR 100% 4.950 3.465 N STK38 n/a
19 TRCN0000022866 GATACCTCAAACTTCGATGAA pLKO.1 1390 3UTR 100% 4.950 3.465 N Stk38 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001743146.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02674 pDONR223 100% 35.6% None 1_292del;1126_1127ins118;1570_3467del n/a
2 ccsbBroad304_02674 pLX_304 0% 35.6% V5 1_292del;1126_1127ins118;1570_3467del n/a
3 TRCN0000478960 AATTAGCCCCCACTGATCTCTTTG pLX_317 28% 35.6% V5 1_292del;1126_1127ins118;1570_3467del n/a
4 ccsbBroadEn_14993 pDONR223 0% 35.6% None 1_292del;1126_1127ins118;1570_3467del n/a
5 ccsbBroad304_14993 pLX_304 0% 35.6% V5 1_292del;1126_1127ins118;1570_3467del n/a
6 TRCN0000489616 GAGTGCTCGCGCCTTACTATGATC pLX_317 23.5% 35.6% V5 (not translated due to prior stop codon) 1_292del;1126_1127ins118;1570_3467del n/a
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