Construct: ORF ccsbBroadEn_02726

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013303.1_s300c1, BRDN0000456230
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC35D1 (23169)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23169 SLC35D1 solute carrier family 35 me... NM_015139.3 100% 100%
2 human 23169 SLC35D1 solute carrier family 35 me... XM_006710478.2 92.9% 92.9% 728_808del
3 human 23169 SLC35D1 solute carrier family 35 me... XM_011541070.2 92.9% 92.9% 728_808del
4 human 23169 SLC35D1 solute carrier family 35 me... XR_001737057.2 16.1% (many diffs)
5 human 23169 SLC35D1 solute carrier family 35 me... XR_001737058.2 14.3% 1_403del;1278_2243del;2435_7399del
6 mouse 242585 Slc35d1 solute carrier family 35 (U... XM_006503080.3 92.1% 97.1% (many diffs)
7 mouse 242585 Slc35d1 solute carrier family 35 (U... NM_177732.4 80% 83.6% (many diffs)
8 mouse 242585 Slc35d1 solute carrier family 35 (U... XM_006503079.3 78.5% 82.1% (many diffs)
9 mouse 242585 Slc35d1 solute carrier family 35 (U... XR_376320.3 44.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1134
ORF length:
1065
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGAAGTT CATAGACGTC AGCATGCTCG GGTTAAAGGA GAAGCCCCCG
121CGAAATCCTC CACACTCCGA GATGAGGAGG AGCTGGGGAT GGCGTCGGCC GAAACGCTGA
181CCGTGTTTCT GAAGCTGCTG GCCGCCGGCT TTTACGGCGT GAGCTCCTTC CTGATCGTGG
241TGGTGAATAA GAGCGTGCTC ACCAATTACA GATTTCCCTC CTCACTATGT GTTGGACTTG
301GCCAGATGGT GGCCACAGTG GCAGTTCTCT GGGTGGGAAA GGCGCTCAGA GTAGTCAAGT
361TTCCTGACCT TGACAGAAAT GTACCTCGAA AGACGTTTCC ACTACCTCTA CTATATTTTG
421GGAACCAAAT CACGGGACTG TTCAGCACAA AGAAACTGAA CTTGCCAATG TTTACAGTTC
481TGAGAAGGTT CTCCATCCTG TTTACAATGT TTGCTGAAGG AGTTTTACTC AAGAAGACTT
541TTTCTTGGGG TATTAAAATG ACTGTATTTG CAATGATTAT TGGAGCCTTT GTAGCTGCCA
601GCTCTGACTT GGCATTTGAT CTGGAAGGAT ATGCTTTTAT TCTGATAAAC GATGTCCTAA
661CAGCAGCAAA TGGTGCATAC GTAAAACAAA AATTAGATTC AAAAGAGCTG GGAAAATATG
721GACTGCTCTA TTACAATGCA CTGTTCATGA TTCTGCCCAC CCTGGCCATT GCGTATTTCA
781CAGGAGATGC ACAAAAGGCT GTGGAGTTTG AAGGCTGGGC TGACACCCTC TTTCTTCTGC
841AGTTCACCCT CTCCTGTGTG ATGGGGTTTA TCTTAATGTA CGCCACAGTA CTCTGCACGC
901AGTATAATTC TGCTCTTACA ACTACAATAG TTGGCTGTAT TAAGAATATA TTAATAACTT
961ATATTGGAAT GGTCTTTGGT GGAGATTATA TTTTCACGTG GACAAACTTC ATTGGTTTAA
1021ATATCAGCAT TGCTGGGAGC CTGGTATATT CCTATATCAC TTTCACTGAA GAGCAGCTGA
1081GCAAACAGTC AGAGGCTAAT AACAAGCTGG ACATTAAGGG GAAAGGAGCA GTGTTGCCAA
1141CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)