Transcript: Mouse XM_006503080.3

PREDICTED: Mus musculus solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 (Slc35d1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc35d1 (242585)
Length:
4593
CDS:
503..1570

Additional Resources:

NCBI RefSeq record:
XM_006503080.3
NBCI Gene record:
Slc35d1 (242585)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006503080.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000314028 ATCGGCCTAAATATCAGTATT pLKO_005 1445 CDS 100% 13.200 18.480 N Slc35d1 n/a
2 TRCN0000079506 CGACAGAAATGTACCTCGAAA pLKO.1 805 CDS 100% 4.950 6.930 N Slc35d1 n/a
3 TRCN0000314078 CAATGTTCCTTTGCAATTATA pLKO_005 1616 3UTR 100% 15.000 12.000 N Slc35d1 n/a
4 TRCN0000233167 GGTCTTTGGTGGAGATTATAT pLKO_005 1405 CDS 100% 15.000 12.000 N SLC35D1 n/a
5 TRCN0000233165 CACCCTGGCCATTGCGTATTT pLKO_005 1192 CDS 100% 13.200 10.560 N SLC35D1 n/a
6 TRCN0000350053 CACCCTGGCCATTGCGTATTT pLKO_005 1192 CDS 100% 13.200 10.560 N Slc35d1 n/a
7 TRCN0000314076 TTCCACTACCTCTACTATATT pLKO_005 831 CDS 100% 15.000 10.500 N Slc35d1 n/a
8 TRCN0000079505 GCCTTTGATCTGGAAGGATAT pLKO.1 1046 CDS 100% 10.800 7.560 N Slc35d1 n/a
9 TRCN0000317806 GCCTTTGATCTGGAAGGATAT pLKO_005 1046 CDS 100% 10.800 7.560 N Slc35d1 n/a
10 TRCN0000079504 CCATGTTTACAGTTCTGAGAA pLKO.1 900 CDS 100% 4.950 3.465 N Slc35d1 n/a
11 TRCN0000079507 CTATTACAATGCACTGTTCAT pLKO.1 1162 CDS 100% 4.950 3.465 N Slc35d1 n/a
12 TRCN0000038548 GCTCTATTACAATGCACTGTT pLKO.1 1159 CDS 100% 4.950 3.465 N SLC35D1 n/a
13 TRCN0000079503 GCTGGAATACAGAGATCCATT pLKO.1 2427 3UTR 100% 4.950 3.465 N Slc35d1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006503080.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02726 pDONR223 100% 92.1% 97.1% None (many diffs) n/a
2 ccsbBroad304_02726 pLX_304 0% 92.1% 97.1% V5 (many diffs) n/a
3 TRCN0000475667 GCGGTCCAATCCCCATATAGTTTT pLX_317 9.2% 92.1% 97.1% V5 (many diffs) n/a
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