Construct: ORF ccsbBroadEn_02736
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006371.1_s300c1, BRDN0000393985
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM168A (23201)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23201 | FAM168A | family with sequence simila... | NM_015159.3 | 100% | 100% | |
| 2 | human | 23201 | FAM168A | family with sequence simila... | NM_001286050.2 | 96.3% | 96.3% | 151_177del |
| 3 | human | 23201 | FAM168A | family with sequence simila... | XM_017017415.2 | 82.1% | 81.7% | 151_152ins126 |
| 4 | human | 23201 | FAM168A | family with sequence simila... | NM_001286051.2 | 54.8% | 54.4% | 277_278ins318 |
| 5 | human | 23201 | FAM168A | family with sequence simila... | XM_017017416.2 | 52.8% | 52.4% | 151_177del;304_305ins318 |
| 6 | mouse | 319604 | Fam168a | family with sequence simila... | NM_178764.3 | 94.8% | 100% | (many diffs) |
| 7 | mouse | 319604 | Fam168a | family with sequence simila... | XM_006507922.2 | 94.8% | 100% | (many diffs) |
| 8 | mouse | 319604 | Fam168a | family with sequence simila... | XM_006507919.2 | 91.3% | 96.3% | (many diffs) |
| 9 | mouse | 319604 | Fam168a | family with sequence simila... | XM_006507920.2 | 91.3% | 96.3% | (many diffs) |
| 10 | mouse | 319604 | Fam168a | family with sequence simila... | XM_011241829.2 | 77.4% | 81.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 771
- ORF length:
- 705
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCCTGTTTAC AGCCCCGTGC AGCCTGGGGC TCCTTATGGC AACCCTAAGA 121 ACATGGCCTA CACGGGTTAC CCCACAGCCT ATCCAGCAGC TGCCCCTGCC TACAATCCCA 181 GCCTGTACCC CACCAATAGT CCCAGTTATG CTCCAGCAAC TCTGCTGATG AAACAGGCCT 241 GGCCACAGAA CTCGTCTTCC TGTGGCACTG AAGGCACCTT CCACCTCCCA GTGGACACCG 301 GGACCGAGAA CCGAACTTAC CAAGCATCCT CTGCGGCTTT CAGATATACT GCGGGGACAC 361 CATACAAGGT CCCACCGACC CAGAGTAACA CTGCTCCACC CCCCTACTCC CCATCACCCA 421 ACCCCTATCA GACGGCCATG TATCCAATCA GAAGTGCCTA CCCCCAGCAG AATCTGTATG 481 CCCAGGGAGC CTACTACACA CAGCCGGTGT ATGCTGCCCA GCCTCATGTC ATCCACCATA 541 CCACGGTCGT CCAGCCCAAC AGCATTCCCT CTGCTATCTA CCCAGCACCT GTTGCCGCCC 601 CGAGGACCAA CGGTGTGGCC ATGGGCATGG TGGCAGGCAC CACCATGGCA ATGTCAGCAG 661 GTACCCTGCT GACTACACCC CAGCACACGG CGATTGGGGC ACACCCTGTC TCCATGCCAA 721 CATATAGGGC CCAAGGAACC CCTGCGTACA GCTACGTGCC CCCACACTGG TACCCAACTT 781 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac