Construct: ORF ccsbBroadEn_02754

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006290.1_s300c1, BRDN0000389864
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJC16 (23341)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23341 DNAJC16 DnaJ heat shock protein fam... NM_015291.4 100% 100%
2 human 23341 DNAJC16 DnaJ heat shock protein fam... XR_001737078.1 84.8% 1_283del;2062_2180del;2749_2765del
3 human 23341 DNAJC16 DnaJ heat shock protein fam... NM_001287811.1 60.1% 60.1% 0_1ins936
4 human 23341 DNAJC16 DnaJ heat shock protein fam... NR_109898.2 37.4% 1_129del;1905_2134del;2706_6264del
5 human 23341 DNAJC16 DnaJ heat shock protein fam... XR_001737079.2 31.1% 1_283del;1880_2973del;3724_7536del
6 mouse 214063 Dnajc16 DnaJ heat shock protein fam... NM_172338.2 82.3% 88.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2412
ORF length:
2346
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGTGAGAAAG TTGAGCATTT CCTGGCAGTT CTTGATAGTT CTGGTTCTGA
121TCCTGCAAAT TCTGTCTGCG TTGGATTTTG ACCCATACAG AGTCCTAGGG GTCAGCCGAA
181CAGCCAGTCA GGCTGATATT AAAAAGGCTT ATAAGAAGCT CGCCCGGGAA TGGCATCCTG
241ACAAAAACAA AGATCCTGGA GCAGAAGACA AGTTCATTCA AATCAGTAAG GCTTACGAGA
301TTCTTTCAAA TGAAGAAAAG AGATCAAATT ATGATCAATA TGGAGACGCT GGAGAGAACC
361AGGGCTACCA GAAGCAGCAA CAGCAGCGAG AGTATCGCTT CCGCCATTTC CATGAAAATT
421TTTATTTTGA TGAATCCTTT TTTCACTTCC CTTTTAATTC TGAACGGCGG GACTCAATTG
481ACGAAAAGTA TTTATTGCAC TTTTCACATT ATGTGAATGA AGTGGTTCCA GATAGCTTCA
541AGAAACCCTA CCTCATCAAG ATCACCTCCG ATTGGTGCTT TAGCTGCATT CATATCGAGC
601CTGTGTGGAA AGAAGTCATT CAAGAACTGG AAGAATTGGG TGTAGGAATT GGCGTGGTCC
661ATGCTGGGTA TGAGAGACGC CTGGCCCATC ACCTAGGGGC ACACAGCACG CCCTCTATCC
721TAGGAATCAT TAACGGGAAA ATCTCCTTCT TCCACAATGC AGTTGTCCGT GAAAATCTGC
781GACAATTTGT AGAAAGTCTT CTTCCAGGGA ACTTGGTGGA GAAAGTTACA AATAAAAATT
841ACGTCAGATT CCTCTCTGGC TGGCAGCAAG AGAATAAGCC TCATGTCCTT CTGTTTGACC
901AAACGCCCAT TGTGCCACTG TTATACAAGT TGACTGCCTT TGCATACAAA GATTATTTAT
961CATTTGGATA TGTATATGTG GGTTTGAGAG GGACGGAAGA GATGACAAGG CGGTACAACA
1021TCAATATCTA CGCCCCTACC CTCTTGGTCT TTAAAGAACA TATAAACAGG CCTGCCGATG
1081TTATCCAGGC CCGAGGTATG AAGAAGCAAA TCATTGACGA CTTCATCACC CGAAACAAAT
1141ATCTATTGGC AGCCAGGCTC ACCAGCCAGA AGTTGTTCCA TGAACTCTGC CCTGTGAAAC
1201GGTCGCATCG ACAGAGGAAG TACTGTGTGG TTTTATTGAC TGCTGAGACT ACCAAGTTGA
1261GCAAACCCTT TGAGGCTTTC CTGTCCTTTG CCCTGGCAAA CACTCAAGAC ACAGTGAGAT
1321TTGTGCATGT CTACAGCAAT CGGCAGCAGG AGTTTGCCGA CACCTTACTA CCAGACAGTG
1381AGGCGTTTCA AGGGAAATCA GCGGTGTCTA TTTTAGAAAG GCGCAACACA GCAGGAAGGG
1441TGGTGTATAA AACCCTGGAA GACCCTTGGA TTGGGAGTGA GAGTGACAAA TTTATCCTCT
1501TGGGCTATCT CGACCAGCTG CGTAAAGATC CAGCTCTTCT GTCCTCTGAA GCAGTGCTTC
1561CTGACCTGAC CGATGAACTT GCCCCTGTTT TTCTCCTTCG ATGGTTCTAC TCTGCTTCTG
1621ACTACATCTC AGACTGCTGG GATAGCATTT TTCACAACAA CTGGAGGGAA ATGATGCCCC
1681TGCTGTCCCT GATCTTCTCT GCCCTCTTCA TCCTCTTCGG CACTGTCATC GTTCAGGCTT
1741TCAGCGACTC TAATGATGAG CGAGAGTCAA GCCCTCCAGA AAAAGAGGAA GCCCAAGAGA
1801AGACTGGGAA AACTGAGCCA AGCTTCACCA AAGAAAACAG CAGCAAGATT CCTAAAAAAG
1861GCTTTGTGGA GGTAACTGAA CTCACAGATG TAACATACAC CAGTAACTTG GTACGTCTGA
1921GGCCAGGCCA CATGAATGTG GTCCTCATCC TGTCGAATTC TACCAAGACC AGCCTACTAC
1981AGAAATTTGC TTTGGAGGTC TACACATTTA CTGGGAGCAG CTGCCTACAC TTCTCCTTCC
2041TGAGTCTAGA TAAACACAGA GAATGGCTAG AATACTTACT AGAATTTGCT CAAGATGCAG
2101CTCCAATCCC AAACCAATAT GATAAGCATT TCATGGAGCG TGACTACACT GGTTATGTAC
2161TGGCTCTGAA TGGCCACAAG AAATACTTCT GCCTCTTCAA GCCCCAAAAG ACAGTCGAAG
2221AGGAGGAAGC CATAGGGTCG TGCAGTGATG TTGACTCTTC CCTCTACCTG GGTGAATCTC
2281GAGGGAAACC TTCCTGTGGC CTTGGATCCA GGCCCATCAA AGGAAAGTTG AGCAAGCTCT
2341CTTTATGGAT GGAACGCCTG CTGGAGGGCT CCTTACAGAG GTTTTATATC CCATCATGGC
2401CTGAACTAGA CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2461caatttgttg caacgaac

Download FASTA (ORF) (Full)

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