Construct: ORF ccsbBroadEn_02754
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006290.1_s300c1, BRDN0000389864
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAJC16 (23341)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23341 | DNAJC16 | DnaJ heat shock protein fam... | NM_015291.4 | 100% | 100% | |
| 2 | human | 23341 | DNAJC16 | DnaJ heat shock protein fam... | XR_001737078.1 | 84.8% | 1_283del;2062_2180del;2749_2765del | |
| 3 | human | 23341 | DNAJC16 | DnaJ heat shock protein fam... | NM_001287811.1 | 60.1% | 60.1% | 0_1ins936 |
| 4 | human | 23341 | DNAJC16 | DnaJ heat shock protein fam... | NR_109898.2 | 37.4% | 1_129del;1905_2134del;2706_6264del | |
| 5 | human | 23341 | DNAJC16 | DnaJ heat shock protein fam... | XR_001737079.2 | 31.1% | 1_283del;1880_2973del;3724_7536del | |
| 6 | mouse | 214063 | Dnajc16 | DnaJ heat shock protein fam... | NM_172338.2 | 82.3% | 88.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2412
- ORF length:
- 2346
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGTGAGAAAG TTGAGCATTT CCTGGCAGTT CTTGATAGTT CTGGTTCTGA 121 TCCTGCAAAT TCTGTCTGCG TTGGATTTTG ACCCATACAG AGTCCTAGGG GTCAGCCGAA 181 CAGCCAGTCA GGCTGATATT AAAAAGGCTT ATAAGAAGCT CGCCCGGGAA TGGCATCCTG 241 ACAAAAACAA AGATCCTGGA GCAGAAGACA AGTTCATTCA AATCAGTAAG GCTTACGAGA 301 TTCTTTCAAA TGAAGAAAAG AGATCAAATT ATGATCAATA TGGAGACGCT GGAGAGAACC 361 AGGGCTACCA GAAGCAGCAA CAGCAGCGAG AGTATCGCTT CCGCCATTTC CATGAAAATT 421 TTTATTTTGA TGAATCCTTT TTTCACTTCC CTTTTAATTC TGAACGGCGG GACTCAATTG 481 ACGAAAAGTA TTTATTGCAC TTTTCACATT ATGTGAATGA AGTGGTTCCA GATAGCTTCA 541 AGAAACCCTA CCTCATCAAG ATCACCTCCG ATTGGTGCTT TAGCTGCATT CATATCGAGC 601 CTGTGTGGAA AGAAGTCATT CAAGAACTGG AAGAATTGGG TGTAGGAATT GGCGTGGTCC 661 ATGCTGGGTA TGAGAGACGC CTGGCCCATC ACCTAGGGGC ACACAGCACG CCCTCTATCC 721 TAGGAATCAT TAACGGGAAA ATCTCCTTCT TCCACAATGC AGTTGTCCGT GAAAATCTGC 781 GACAATTTGT AGAAAGTCTT CTTCCAGGGA ACTTGGTGGA GAAAGTTACA AATAAAAATT 841 ACGTCAGATT CCTCTCTGGC TGGCAGCAAG AGAATAAGCC TCATGTCCTT CTGTTTGACC 901 AAACGCCCAT TGTGCCACTG TTATACAAGT TGACTGCCTT TGCATACAAA GATTATTTAT 961 CATTTGGATA TGTATATGTG GGTTTGAGAG GGACGGAAGA GATGACAAGG CGGTACAACA 1021 TCAATATCTA CGCCCCTACC CTCTTGGTCT TTAAAGAACA TATAAACAGG CCTGCCGATG 1081 TTATCCAGGC CCGAGGTATG AAGAAGCAAA TCATTGACGA CTTCATCACC CGAAACAAAT 1141 ATCTATTGGC AGCCAGGCTC ACCAGCCAGA AGTTGTTCCA TGAACTCTGC CCTGTGAAAC 1201 GGTCGCATCG ACAGAGGAAG TACTGTGTGG TTTTATTGAC TGCTGAGACT ACCAAGTTGA 1261 GCAAACCCTT TGAGGCTTTC CTGTCCTTTG CCCTGGCAAA CACTCAAGAC ACAGTGAGAT 1321 TTGTGCATGT CTACAGCAAT CGGCAGCAGG AGTTTGCCGA CACCTTACTA CCAGACAGTG 1381 AGGCGTTTCA AGGGAAATCA GCGGTGTCTA TTTTAGAAAG GCGCAACACA GCAGGAAGGG 1441 TGGTGTATAA AACCCTGGAA GACCCTTGGA TTGGGAGTGA GAGTGACAAA TTTATCCTCT 1501 TGGGCTATCT CGACCAGCTG CGTAAAGATC CAGCTCTTCT GTCCTCTGAA GCAGTGCTTC 1561 CTGACCTGAC CGATGAACTT GCCCCTGTTT TTCTCCTTCG ATGGTTCTAC TCTGCTTCTG 1621 ACTACATCTC AGACTGCTGG GATAGCATTT TTCACAACAA CTGGAGGGAA ATGATGCCCC 1681 TGCTGTCCCT GATCTTCTCT GCCCTCTTCA TCCTCTTCGG CACTGTCATC GTTCAGGCTT 1741 TCAGCGACTC TAATGATGAG CGAGAGTCAA GCCCTCCAGA AAAAGAGGAA GCCCAAGAGA 1801 AGACTGGGAA AACTGAGCCA AGCTTCACCA AAGAAAACAG CAGCAAGATT CCTAAAAAAG 1861 GCTTTGTGGA GGTAACTGAA CTCACAGATG TAACATACAC CAGTAACTTG GTACGTCTGA 1921 GGCCAGGCCA CATGAATGTG GTCCTCATCC TGTCGAATTC TACCAAGACC AGCCTACTAC 1981 AGAAATTTGC TTTGGAGGTC TACACATTTA CTGGGAGCAG CTGCCTACAC TTCTCCTTCC 2041 TGAGTCTAGA TAAACACAGA GAATGGCTAG AATACTTACT AGAATTTGCT CAAGATGCAG 2101 CTCCAATCCC AAACCAATAT GATAAGCATT TCATGGAGCG TGACTACACT GGTTATGTAC 2161 TGGCTCTGAA TGGCCACAAG AAATACTTCT GCCTCTTCAA GCCCCAAAAG ACAGTCGAAG 2221 AGGAGGAAGC CATAGGGTCG TGCAGTGATG TTGACTCTTC CCTCTACCTG GGTGAATCTC 2281 GAGGGAAACC TTCCTGTGGC CTTGGATCCA GGCCCATCAA AGGAAAGTTG AGCAAGCTCT 2341 CTTTATGGAT GGAACGCCTG CTGGAGGGCT CCTTACAGAG GTTTTATATC CCATCATGGC 2401 CTGAACTAGA CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2461 caatttgttg caacgaac