Construct: ORF ccsbBroadEn_02797
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008946.1_s300c1, BRDN0000392314
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF346 (23567)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_012279.4 | 100% | 100% | |
| 2 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009295.2 | 100% | 100% | |
| 3 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009296.2 | 100% | 100% | |
| 4 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001363713.1 | 94.8% | 94.8% | 516_563del |
| 5 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308213.1 | 92.1% | 92.1% | 175_249del |
| 6 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308214.2 | 89.1% | 89.1% | 277_278ins96 |
| 7 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_005265860.2 | 87.7% | 87.7% | 175_249del;591_638del |
| 8 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_011534493.1 | 87.7% | 87.7% | 175_249del;591_638del |
| 9 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009299.2 | 85.4% | 82.9% | 703_704ins94;789_828del |
| 10 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009297.2 | 81.2% | 78.7% | 516_563del;751_752ins94;837_876del |
| 11 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009300.1 | 79.9% | 76.4% | (many diffs) |
| 12 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_011534496.2 | 79% | 76.4% | 175_249del;778_779ins94;864_903del |
| 13 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308215.2 | 78.9% | 78.9% | 515_516ins186 |
| 14 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009301.2 | 78.9% | 78.9% | 515_516ins186 |
| 15 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_011534495.3 | 76.2% | 64.9% | (many diffs) |
| 16 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_011534494.1 | 75.4% | 71.5% | (many diffs) |
| 17 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_005265864.3 | 72.7% | 72.7% | 175_249del;590_591ins186 |
| 18 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009298.1 | 71.8% | 70.7% | (many diffs) |
| 19 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009302.1 | 70.4% | 63.6% | (many diffs) |
| 20 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308218.2 | 66% | 63.2% | (many diffs) |
| 21 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308216.2 | 60.1% | 42.9% | (many diffs) |
| 22 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308219.1 | 57.5% | 39.2% | (many diffs) |
| 23 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_017009303.1 | 55.1% | 54.8% | 0_1ins367;2_3insCA;147_194del |
| 24 | human | 23567 | ZNF346 | zinc finger protein 346 | XM_011534497.2 | 43.7% | 38.6% | (many diffs) |
| 25 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308221.2 | 40.1% | 40.1% | 173_174ins528 |
| 26 | human | 23567 | ZNF346 | zinc finger protein 346 | NM_001308223.1 | 40.1% | 40.1% | 173_174ins528 |
| 27 | human | 23567 | ZNF346 | zinc finger protein 346 | NR_131773.2 | 17% | 1_43del;413_414ins145;781_4169del | |
| 28 | human | 23567 | ZNF346 | zinc finger protein 346 | NR_131774.2 | 12.7% | 1_43del;412_413ins331;595_3983del | |
| 29 | mouse | 26919 | Zfp346 | zinc finger protein 346 | NM_012017.2 | 88.2% | 84% | (many diffs) |
| 30 | mouse | 26919 | Zfp346 | zinc finger protein 346 | XM_006517259.3 | 80.6% | 76.7% | (many diffs) |
| 31 | mouse | 26919 | Zfp346 | zinc finger protein 346 | XM_006517260.3 | 66.4% | 63% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 948
- ORF length:
- 882
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GTATCCCGCG CCGGCCACGG TGCAGGCCGC GGACGGCGGA GCGGCCGGGC 121 CTTACAGCAG CTCGGAGTTG CTGGAGGGCC AGGAGCCGGA CGGGGTGCGC TTTGACCGCG 181 AGAGGGCGCG CCGCCTGTGG GAAGCCGTGT CCGGTGCCCA GCCGGTGGGT AGAGAGGAAG 241 TGGAGCACAT GATCCAGAAG AACCAATGTC TCTTCACCAA CACCCAGTGT AAGGTTTGCT 301 GCGCCTTGCT TATTTCTGAG TCCCAGAAGC TGGCACATTA CCAGAGCAAA AAACATGCCA 361 ACAAAGTGAA GAGATACCTA GCAATCCATG GAATGGAGAC ATTAAAGGGG GAAACGAAGA 421 AGCTAGACTC AGATCAGAAG AGCAGCAGAA GCAAAGACAA GAACCAGTGC TGCCCCATCT 481 GTAACATGAC CTTTTCCTCC CCTGTCGTGG CCCAGTCGCA CTACCTGGGG AAGACCCACG 541 CAAAGAACTT AAAGCTGAAG CAGCAGTCCA CTAAGGTGGA AGCCTTGCAC CAGAATAGAG 601 AGATGATAGA CCCAGACAAG TTCTGCAGCC TCTGCCATGC AACTTTCAAC GACCCTGTCA 661 TGGCTCAACA ACATTATGTG GGCAAGAAAC ACAGAAAACA GGAGACCAAG CTCAAACTAA 721 TGGCACGCTA TGGGCGGCTG GCGGACCCTG CTGTCACTGA CTTTCCAGCT GGAAAGGGCT 781 ACCCCTGCAA AACATGTAAG ATAGTGCTGA ACTCCATAGA ACAGTACCAA GCTCATGTCA 841 GCGGCTTCAA ACACAAGAAC CAGTCACCAA AAACAGTGGC ATCATCCCTG GGCCAGATTC 901 CAATGCAAAG GCAACCCATT CAGAAAGACT CAACCACCTT GGAAGACTAC CCAACTTTCT 961 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac