Construct: ORF ccsbBroadEn_02842
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016662.1_s300c1, BRDN0000396422
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MTCH2 (23788)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23788 | MTCH2 | mitochondrial carrier 2 | NM_014342.4 | 100% | 100% | |
| 2 | human | 23788 | MTCH2 | mitochondrial carrier 2 | NM_001317232.1 | 97% | 97% | 277_278ins27 |
| 3 | human | 23788 | MTCH2 | mitochondrial carrier 2 | NM_001317231.1 | 96.4% | 100% | 910_942del |
| 4 | human | 23788 | MTCH2 | mitochondrial carrier 2 | XM_011519959.2 | 89.2% | 89.4% | (many diffs) |
| 5 | human | 23788 | MTCH2 | mitochondrial carrier 2 | XM_011519960.3 | 86.4% | 86.6% | (many diffs) |
| 6 | human | 23788 | MTCH2 | mitochondrial carrier 2 | XM_011519961.2 | 85.8% | 78.1% | (many diffs) |
| 7 | human | 23788 | MTCH2 | mitochondrial carrier 2 | XM_006718172.2 | 85.4% | 76.7% | 681_682ins68;777_778ins64 |
| 8 | human | 23788 | MTCH2 | mitochondrial carrier 2 | XM_017017462.2 | 82.5% | 73.8% | 277_278ins27;654_655ins68;750_751ins64 |
| 9 | human | 23788 | MTCH2 | mitochondrial carrier 2 | NM_001317233.1 | 51.1% | 51.1% | 0_1ins444 |
| 10 | mouse | 56428 | Mtch2 | mitochondrial carrier 2 | NM_019758.3 | 91% | 93.7% | (many diffs) |
| 11 | mouse | 56428 | Mtch2 | mitochondrial carrier 2 | NM_001317243.1 | 88.8% | 91.7% | (many diffs) |
| 12 | mouse | 56428 | Mtch2 | mitochondrial carrier 2 | NM_001317242.1 | 88.4% | 91% | (many diffs) |
| 13 | mouse | 56428 | Mtch2 | mitochondrial carrier 2 | NM_001317241.1 | 87.8% | 93.7% | (many diffs) |
| 14 | mouse | 56428 | Mtch2 | mitochondrial carrier 2 | NM_001317244.1 | 52.4% | 54.7% | (many diffs) |
| 15 | mouse | 56428 | Mtch2 | mitochondrial carrier 2 | XM_017319137.1 | 52.4% | 54.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 975
- ORF length:
- 909
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGACGCGGCC AGTCAGGTGC TCCTGGGCTC CGGTCTCACC ATCCTGTCCC 121 AGCCGCTCAT GTACGTGAAA GTGCTCATCC AGGTGGGATA TGAGCCTCTT CCTCCAACAA 181 TAGGACGAAA TATTTTTGGG CGGCAAGTGT GTCAGCTTCC TGGTCTCTTT AGTTATGCTC 241 AGCACATTGC CAGTATCGAT GGGAGGCGCG GGTTGTTCAC AGGCTTAACT CCAAGACTGT 301 GTTCGGGAGT CCTTGGAACT GTGGTCCATG GTAAAGTTTT ACAGCATTAC CAGGAGAGTG 361 ACAAGGGTGA GGAGTTAGGA CCTGGAAATG TACAGAAAGA AGTCTCATCT TCCTTTGACC 421 ACGTTATCAA GGAGACAACT CGAGAGATGA TCGCTCGTTC TGCTGCTACC CTCATCACAC 481 ATCCCTTCCA TGTGATCACT CTGAGATCTA TGGTACAGTT CATTGGCAGA GAATCCAAGT 541 ACTGTGGACT TTGTGATTCC ATAATAACCA TCTATCGGGA AGAGGGCATT CTAGGATTTT 601 TCGCGGGTCT TGTTCCTCGC CTTCTAGGTG ACATCCTTTC TTTGTGGCTG TGTAACTCAC 661 TGGCCTACCT CGTCAATACC TATGCACTGG ACAGTGGGGT TTCTACCATG AATGAAATGA 721 AGAGTTATTC TCAAGCTGTC ACAGGATTTT TTGCGAGTAT GTTGACCTAT CCCTTTGTGC 781 TTGTCTCCAA TCTTATGGCT GTCAACAACT GTGGTCTTGC TGGTGGATGC CCTCCTTACT 841 CCCCAATATA TACGTCTTGG ATAGACTGTT GGTGCATGCT ACAAAAAGAG GGGAATATGA 901 GCCGAGGAAA TAGCTTATTT TTCCGGAAGG TCCCCTTTGG GAAGACTTAT TGTTGTGACC 961 TGAAAATGTT AATTTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1021 tatcaatttg ttgcaacgaa c