Construct: ORF ccsbBroadEn_02854
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002538.1_s300c1, BRDN0000397183
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC39A6 (25800)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25800 | SLC39A6 | solute carrier family 39 me... | NM_001099406.1 | 100% | 100% | |
| 2 | human | 25800 | SLC39A6 | solute carrier family 39 me... | NM_012319.4 | 57.2% | 57% | (many diffs) |
| 3 | human | 25800 | SLC39A6 | solute carrier family 39 me... | XM_011525900.2 | 57.2% | 57% | (many diffs) |
| 4 | human | 25800 | SLC39A6 | solute carrier family 39 me... | XM_011525901.2 | 57.2% | 57% | (many diffs) |
| 5 | mouse | 106957 | Slc39a6 | solute carrier family 39 (m... | NM_139143.3 | 48.7% | 53.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1365
- ORF length:
- 1299
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CATCCAGGTT CCGCTGAATG CAACAGAGTT CAACTATCTC TGTCCAGCCA 121 TCATCAACCA AATTGATGCT AGATCTTGTC TGATTCATAC AAGTGAAAAG AAGGCTGAAA 181 TCCCTCCAAA GACCTATTCA TTACAAATAG CCTGGGTTGG TGGTTTTATA GCCATTTCCA 241 TCATCAGTTT CCTGTCTCTG CTGGGGGTTA TCTTAGTGCC TCTCATGAAT CGGGTGTTTT 301 TCAAATTTCT CCTGAGTTTC CTTGTGGCAC TGGCCGTTGG GACTTTGAGT GGTGATGCTT 361 TTTTACACCT TCTTCCACAT TCTCATGCAA GTCACCACCA TAGTCATAGC CATGAAGAAC 421 CAGCAATGGA AATGAAAAGA GGACCACTTT TCAGTCATCT GTCTTCTCAA AACATAGAAG 481 AAAGTGCCTA TTTTGATTCC ACGTGGAAGG GTCTAACAGC TCTAGGAGGC CTGTATTTCA 541 TGTTTCTTGT TGAACATGTC CTCACATTGA TCAAACAATT TAAAGATAAG AAGAAAAAGA 601 ATCAGAAGAA ACCTGAAAAT GATGATGATG TGGAGATTAA GAAGCAGTTG TCCAAGTATG 661 AATCTCAACT TTCAACAAAT GAGGAGAAAG TAGATACAGA TGATCGAACT GAAGGCTATT 721 TACGAGCAGA CTCACAAGAG CCCTCCCACT TTGATTCTCA GCAGCCTGCA GTCTTGGAAG 781 AAGAAGAGGT CATGATAGCT CATGCTCATC CACAGGAAGT CTACAATGAA TATGTACCCA 841 GAGGGTGCAA GAATAAATGC CATTCACATT TCCACGATAC ACTCGGCCAG TCAGACGATC 901 TCATTCACCA CCATCATGAC TACCATCATA TTCTCCATCA TCACCACCAC CAAAACCACC 961 ATCCTCACAG TCACAGCCAG CGCTACTCTC GGGAGGAGCT GAAAGATGCC GGCGTCGCCA 1021 CTCTGGCCTG GATGGTGATA ATGGGTGATG GCCTGCACAA TTTCAGCGAT GGCCTAGCAA 1081 TTGGTGCTGC TTTTACTGAA GGCTTATCAA GTGGTTTAAG TACTTCTGTT GCTGTGTTCT 1141 GTCATGAGTT GCCTCATGAA TTAGGTGACT TTGCTGTTCT ACTAAAGGCT GGCATGACCG 1201 TTAAGCAGGC TGTCCTTTAT AATGCATTGT CAGCCATGCT GGCGTATCTT GGAATGGCAA 1261 CAGGAATTTT CATTGGTCAT TATGCTGAAA ATGTTTCTAT GTGGATATTT GCACTTACTG 1321 CTGGCTTATT CATGTATGTT GCTCTGGTTG ATATGGTAAG TTTTTACCCA ACTTTCTTGT 1381 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c