Construct: ORF ccsbBroadEn_02902

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013700.1_s300c1, BRDN0000394714
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NSMF (26012)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26012 NSMF NMDA receptor synaptonuclea... NM_001130971.1 100% 100%
2 human 26012 NSMF NMDA receptor synaptonuclea... NM_001130970.1 99.6% 99.6% 704_709delCCATCT
3 human 26012 NSMF NMDA receptor synaptonuclea... NM_015537.4 95.6% 95.6% 705_773del
4 human 26012 NSMF NMDA receptor synaptonuclea... NM_001130969.1 95.2% 95.2% 705_779del
5 human 26012 NSMF NMDA receptor synaptonuclea... XM_005266062.5 94% 94% 756_757ins90
6 human 26012 NSMF NMDA receptor synaptonuclea... XM_011518496.3 93.6% 93.6% 704_709delCCATCT;762_763ins90
7 human 26012 NSMF NMDA receptor synaptonuclea... XM_005266061.5 89.9% 89.9% 705_773del;825_826ins90
8 human 26012 NSMF NMDA receptor synaptonuclea... NM_001178064.1 89.6% 89.6% 705_779del;831_832ins90
9 human 26012 NSMF NMDA receptor synaptonuclea... XM_017014597.2 62% 47.1% (many diffs)
10 human 26012 NSMF NMDA receptor synaptonuclea... XM_011518497.2 52% 52% 0_1ins726
11 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498200.1 88.9% 93.6% (many diffs)
12 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_020276.3 88.5% 93.3% (many diffs)
13 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001039387.1 85.1% 89.6% (many diffs)
14 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001039386.1 84.7% 89.2% (many diffs)
15 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001177654.1 84.6% 89% (many diffs)
16 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498203.3 83.2% 87.7% (many diffs)
17 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498202.3 82.9% 87.4% (many diffs)
18 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319143.1 79.8% 84% (many diffs)
19 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001177655.1 79.6% 83.9% (many diffs)
20 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319142.1 79.5% 83.7% (many diffs)
21 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498201.1 79.3% 83.6% (many diffs)
22 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319141.1 76.7% 80.7% (many diffs)
23 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319140.1 76.4% 80.5% (many diffs)
24 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319144.1 58.5% 56.4% (many diffs)
25 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319145.1 55.3% 58.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1584
ORF length:
1515
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGCGCCGCC GCCTCCAGGA GGAGGGCGCT GAGGAGCGAG GCCATGTCCT
121CGGTGGCGGC CAAAGTGCGA GCAGCCCGAG CGTTTGGAGA GTACCTGTCC CAGAGTCACC
181CTGAGAACCG CAACGGCGCA GATCACCTGC TGGCTGATGC CTACTCTGGC CACGACGGGT
241CCCCCGAGAT GCAGCCGGCC CCCCAGAACA AGCGCCGCCT GTCCCTCGTC TCCAACGGCT
301GCTACGAGGG CAGCCTCTCA GAGGAGCCCA GCATTAGGAA GCCCGCAGGC GAGGGCCCTC
361AGCCTCGAGT GTACACCATC TCTGGGGAGC CTGCCCTGCT GCCCAGCCCT GAGGCGGAGG
421CCATTGAGCT GGCGGTGGTG AAGGGGCGGC GGCAGCGGCA CCCTCACCAT CACAGCCAGC
481CCCTGCGCGC CAGCCCTGGT GGCAGCCGGG AGGACGTCAG CAGGCCCTGC CAGAGCTGGG
541CGGGCAGCCG CCAGGGCTCC AAGGAGTGCC CCGGATGTGC CCAGCTGGCT CCTGGCCCCA
601CCCCTCGGGC CTTTGGGCTG GACCAGCCAC CTCTGCCTGA GACCTCCGGT CGCCGCAAGA
661AGCTGGAGAG GATGTACAGC GTTGACCGTG TGTCTGACGA CATCCCTATT CGTACCTGGT
721TCCCCAAGGA AAATCTTTTC AGCTTCCAGA CAGCAACCAC AACTATGCAA GCGAACTTCC
781GCAAACACCT GCGCATGGTC GGCAGCCGGA GGGTGAAGGC CCAGACGTTC GCTGAGCGGC
841GCGAGCGGAG CTTCAGCCGG TCCTGGAGCG ACCCCACCCC CATGAAAGCC GACACTTCCC
901ACGACTCCCG AGACAGCAGT GACCTGCAGA GCTCCCACTG CACGCTGGAC GAGGCCTTCG
961AGGACCTGGA CTGGGACACT GAGAAGGGCC TGGAGGCTGT GGCCTGCGAC ACCGAAGGCT
1021TCGTGCCACC AAAGGTCATG CTCATTTCCT CCAAGGTGCC CAAGGCTGAG TACATCCCCA
1081CTATCATCCG CCGGGATGAC CCCTCCATCA TCCCCATCCT CTACGACCAT GAGCACGCAA
1141CCTTCGAGGA CATCCTTGAG GAGATAGAGA GGAAGCTGAA CGTCTACCAC AAGGGAGCCA
1201AGATCTGGAA AATGCTGATT TTCTGCCAGG GAGGTCCTGG ACACCTCTAT CTCCTCAAGA
1261ACAAGGTGGC CACCTTTGCC AAAGTGGAGA AGGAAGAGGA CATGATTCAC TTCTGGAAGC
1321GGCTGAGCCG CCTGATGAGC AAAGTGAACC CAGAGCCGAA CGTCATCCAC ATCATGGGCT
1381GCTACATTCT GGGGAACCCC AATGGAGAGA AGCTGTTCCA GAACCTCAGG ACCCTCATGA
1441CTCCTTATAG GGTCACCTTC GAGTCACCCC TGGAGCTCTC AGCCCAAGGG AAGCAGATGA
1501TCGAGACGTA CTTTGACTTC CGGTTGTATC GCCTGTGGAA GAGCCGCCAG CACTCGAAGC
1561TGCTGGACTT TGACGACGTC CTGTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1621agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)