Construct: ORF ccsbBroadEn_02938
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000031.1_s300c1, BRDN0000455895
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR2L2 (26246)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26246 | OR2L2 | olfactory receptor family 2... | NM_001004686.2 | 100% | 100% | |
| 2 | human | 26246 | OR2L2 | olfactory receptor family 2... | XM_011544158.2 | 100% | 100% | |
| 3 | human | 81466 | OR2L5 | olfactory receptor family 2... | NM_001258284.1 | 93.8% | 90% | (many diffs) |
| 4 | human | 26247 | OR2L1P | olfactory receptor family 2... | NR_002145.1 | 91.7% | (many diffs) | |
| 5 | human | 391190 | OR2L8 | olfactory receptor family 2... | NM_001001963.1 | 89.1% | 85.5% | (many diffs) |
| 6 | human | 391192 | OR2L3 | olfactory receptor family 2... | NM_001004687.1 | 88.8% | 84.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1005
- ORF length:
- 936
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAAAATTAC AATCAAACAT CAACTGATTT CATCTTATTG GGGCTGTTCC 121 CACAATCAAG AATTGGCCTT TTCGTATTCA CCCTCATTTT TCTCATTTTC CTAATGGCTC 181 TAATTGGAAA TCTATCCATG ATTCTTCTCA TCTTTTTGGA CATCCATCTC CACACACCTA 241 TGTATTTCCT ACTTAGTCAG CTCTCCCTCA TTGACCTAAA TTACATCTCC ACCATTGTTC 301 CAAAGATGGT TTATGATTTT CTGTATGGAA ACAAGTCTAT CTCCTTCACT GGATGTGGGA 361 TTCAGAGTTT CTTCTTCTTG ACTTTAGCAG TTGCAGAAGG GCTGCTCCTG ACATCAATGG 421 CCTATGATCG TTATGTGGCC ATTTGCTTTC CTCTCCACTA TCCCATCCGT ATAAGCAAAA 481 GAGTGTGTGT GATGATGATA ACAGGATCTT GGATGATAAG CTCTATCAAC TCTTGTGCTC 541 ACACAGTATA TGCACTCTGT ATCCCATATT GCAAGTCCAG AGCCATCAAT CATTTTTTCT 601 GTGATGTTCC AGCTATGTTG ACGCTAGCCT GCACAGACAC TTGGGTCTAT GAGAGCACAG 661 TGTTTTTGAG CAGCACCATC TTTCTTGTGC TTCCTTTCAC TGGTATTGCA TGTTCCTATG 721 GCCGGGTTCT CCTTGCTGTC TACCGCATGC ACTCTGCAGA AGGGAGGAAG AAGGCCTATT 781 CAACCTGTAG CACCCACCTC ACTGTAGTGT CCTTCTACTA TGCACCCTTT GCTTATACCT 841 ATGTACGTCC AAGATCCCTG CGATCTCCAA CAGAGGACAA GATTCTGGCT GTTTTCTACA 901 CCATCCTCAC CCCAATGCTC AACCCCATCA TCTACAGCCT GAGAAACAAG GAGGTGATGG 961 GGGCCCTGAC ACAAGTGATT CAGAAAATCT TCTCAGTGAA AATGTTGCCA ACTTTCTTGT 1021 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c