Construct: ORF ccsbBroadEn_02942

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017402.1_s300c1, BRDN0000390353
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXO25 (26260)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26260 FBXO25 F-box protein 25 NM_012173.3 100% 100%
2 human 26260 FBXO25 F-box protein 25 XM_011534749.1 97% 97% 784_810del
3 human 26260 FBXO25 F-box protein 25 NM_183420.2 81.2% 72% 1_151del;237_286del
4 human 26260 FBXO25 F-box protein 25 XM_024447123.1 81.2% 72% 1_151del;237_286del
5 human 26260 FBXO25 F-box protein 25 XM_024447124.1 81.2% 72% 1_151del;237_286del
6 human 26260 FBXO25 F-box protein 25 NM_183421.2 79.2% 70.2% 1_151del;237_286del;985_1011del
7 human 26260 FBXO25 F-box protein 25 XM_011534748.3 79.2% 70.2% 1_151del;237_286del;985_1011del
8 human 26260 FBXO25 F-box protein 25 XM_017013313.2 79.2% 70.2% 1_151del;237_286del;985_1011del
9 human 26260 FBXO25 F-box protein 25 XM_024447125.1 78.9% 67.7% (many diffs)
10 human 26260 FBXO25 F-box protein 25 XM_024447126.1 78.9% 67.7% (many diffs)
11 human 26260 FBXO25 F-box protein 25 XM_017013314.1 76.9% 66.1% (many diffs)
12 human 26260 FBXO25 F-box protein 25 XR_002956627.1 13.1% (many diffs)
13 mouse 66822 Fbxo25 F-box protein 25 NM_025785.2 67.8% 66.6% (many diffs)
14 mouse 66822 Fbxo25 F-box protein 25 XM_006508854.3 66.2% 65% (many diffs)
15 mouse 66822 Fbxo25 F-box protein 25 NM_001347316.1 66% 64.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
939
ORF length:
873
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GAAATATTCA ATAATGAAGA GCATGAATAT GCATCGAAAA AAAGGAAAAA
121GGACCATTTT AGAAATGACA CAAATACTCA AAAGGCATGG CTATTGCACC TTGGGAGAAG
181CCTTTAATCG GTTAGACTTC TCAAGTGCAA TTCAAGATAT CCGAAGGTTC AATTATGTGG
241TCAAACTGTT GCAGCTAATT GCAAAATCCC AGTTAACTTC ATTGAGTGGC GTGGCACAGA
301AGAATTACTT CAACATTTTG GATAAAATCG TTCAAAAGGT TCTTGATGAC CACCACAATC
361CTCGCTTAAT CAAAGATCTT CTGCAAGACC TAAGCTCTAC CCTCTGCATT CTTATTAGAG
421GAGTAGGGAA GTCTGTATTA GTGGGAAACA TCAATATTTG GATTTGCCGA TTAGAAACTA
481TTCTCGCCTG GCAACAACAG CTACAGGATC TTCAGATGAC TAAGCAAGTG AACAATGGCC
541TCACCCTCAG TGACCTTCCT CTGCACATGC TGAACAACAT CCTATACCGG TTCTCAGACG
601GATGGGACAT CATCACCTTA GGCCAGGTGA CCCCCACGTT GTATATGCTT AGTGAAGACA
661GACAGCTGTG GAAGAAGCTT TGTCAGTACC ATTTTGCTGA AAAGCAGTTT TGTAGACATT
721TGATCCTTTC AGAAAAAGGT CATATTGAAT GGAAGTTGAT GTACTTTGCA CTTCAGAAAC
781ATTACCCAGC GAAGGAGCAG TACGGAGACA CACTGCATTT CTGTCGGCAC TGCAGCATTC
841TCTTTTGGAA GGACTCAGGA CACCCCTGCA CGGCGGCCGA CCCTGACAGC TGCTTCACGC
901CTGTGTCTCC GCAGCACTTC ATCGACCTCT TCAAGTTTTA CCCAACTTTC TTGTACAAAG
961Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)