Construct: ORF ccsbBroadEn_02970
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009057.1_s300c1, BRDN0000386900
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR2H1 (26716)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26716 | OR2H1 | olfactory receptor family 2... | NM_001318014.1 | 100% | 100% | |
| 2 | human | 26716 | OR2H1 | olfactory receptor family 2... | NM_001318022.1 | 100% | 100% | |
| 3 | human | 26716 | OR2H1 | olfactory receptor family 2... | NM_030883.4 | 100% | 100% | |
| 4 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_011514470.2 | 100% | 100% | |
| 5 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_011514472.2 | 100% | 100% | |
| 6 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_011514473.2 | 100% | 100% | |
| 7 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_011514479.2 | 100% | 100% | |
| 8 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_011514483.2 | 100% | 100% | |
| 9 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_011514484.2 | 100% | 100% | |
| 10 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_017010737.1 | 100% | 100% | |
| 11 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_017010738.1 | 100% | 100% | |
| 12 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_017010739.1 | 100% | 100% | |
| 13 | human | 7932 | OR2H2 | olfactory receptor family 2... | NM_007160.3 | 88.6% | 85.4% | (many diffs) |
| 14 | human | 7932 | OR2H2 | olfactory receptor family 2... | XM_011514912.3 | 86.3% | 82.9% | (many diffs) |
| 15 | human | 26716 | OR2H1 | olfactory receptor family 2... | XM_024446402.1 | 75.3% | 75.3% | 0_1ins234 |
| 16 | mouse | 258470 | Olfr91 | olfactory receptor 91 | NM_182714.2 | 84.9% | 83.5% | (many diffs) |
| 17 | mouse | 258470 | Olfr91 | olfactory receptor 91 | XM_017317477.1 | 84.9% | 83.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1014
- ORF length:
- 948
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT TAACCAAAGC TCCCCCATGG GCTTCCTCCT TCTGGGCTTC TCTGAACACC 121 CAGCACTGGA AAGGACTCTC TTTGTGGTTG TCTTCACTTC CTACCTCTTG ACCCTGGTGG 181 GCAACACACT CATCATCCTG CTGTCTGTAC TGTACCCCAG GCTCCACTCT CCAATGTACT 241 TTTTCCTCTC TGACCTCTCC TTCTTGGACC TCTGCTTTAC CACAAGTTGT GTCCCCCAGA 301 TGCTGGTCAA CCTCTGGGGC CCAAAGAAGA CCATCAGCTT CCTGGGATGC TCTGTCCAGC 361 TCTTCATCTT CCTGTCCCTG GGGACCACTG AGTGCATCCT CCTGACAGTG ATGGCCTTTG 421 ACCGATACGT GGCTGTCTGC CAGCCCCTCC ACTATGCCAC CATCATCCAC CCCCGCCTGT 481 GCTGGCAGCT GGCATCTGTG GCCTGGGTTA TGAGTCTGGT TCAATCGATA GTCCAGACAC 541 CATCCACCCT CCACTTGCCC TTCTGTCCCC ACCAGCAGAT AGATGACTTT TTATGTGAGG 601 TCCCATCTCT GATTCGACTC TCCTGTGGAG ATACCTCCTA CAATGAAATC CAGTTGGCTG 661 TGTCCAGTGT CATCTTCGTG GTTGTGCCTC TCAGCCTCAT CCTTGCCTCT TATGGAGCCA 721 CTGCCCAGGC AGTGCTGAGG ATTAACTCTG CCACAGCATG GAGAAAGGCC TTTGGGACCT 781 GCTCCTCCCA TCTCACTGTG GTCACCCTCT TCTACAGCTC AGTCATTGCT GTCTACCTCC 841 AGCCCAAAAA TCCGTATGCC CAAGGGAGGG GCAAGTTCTT TGGTCTCTTC TATGCAGTGG 901 GCACTCCTTC ACTTAACCCT CTCGTATACA CCCTGAGGAA CAAGGAGATA AAGCGAGCAC 961 TCAGGAGGTT ACTAGGGAAG GAAAGAGACT CCAGGGAAAG CTGGAGAGCT GCTTACCCAA 1021 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac