Construct: ORF ccsbBroadEn_03098

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003232.1_s300c1, BRDN0000395442
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GNL2 (29889)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29889 GNL2 G protein nucleolar 2 NM_013285.3 100% 100%
2 human 29889 GNL2 G protein nucleolar 2 NM_001323623.1 91.4% 91.4% 910_1113del
3 human 29889 GNL2 G protein nucleolar 2 NM_001323624.1 74.6% 74.1% (many diffs)
4 human 29889 GNL2 G protein nucleolar 2 XM_024446591.1 71.5% 71.5% 0_1ins477;433_636del
5 mouse 230737 Gnl2 guanine nucleotide binding ... NM_145552.2 84.6% 86.2% (many diffs)
6 mouse 230737 Gnl2 guanine nucleotide binding ... XM_006503029.3 65.3% 65.7% (many diffs)
7 mouse 230737 Gnl2 guanine nucleotide binding ... XM_017320153.1 59% 58.7% (many diffs)
8 mouse 230737 Gnl2 guanine nucleotide binding ... XM_011240502.2 56.9% 56.4% (many diffs)
9 mouse 230737 Gnl2 guanine nucleotide binding ... XR_001784130.1 56.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2259
ORF length:
2193
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GAAGCCCAAG TACAAAGGAC GGAGCACCAT CAACCCGTCC AAGGCCAGCA
121CAAACCCAGA TCGAGTGCAG GGAGCAGGAG GCCAAAACAT GAGGGACCGG GCCACCATCC
181GGCGCCTGAA TATGTATAGG CAAAAGGAGC GCAGGAACAG TCGTGGTAAA ATAATTAAAC
241CCCTGCAATA TCAATCAACG GTGGCTTCTG GCACAGTGGC AAGAGTAGAG CCAAATATTA
301AATGGTTTGG AAACACACGT GTGATTAAGC AGTCATCATT ACAAAAATTT CAAGAGGAAA
361TGGATACAGT TATGAAGGAT CCATACAAAG TTGTCATGAA GCAAAGCAAG TTACCAATGT
421CTCTTCTCCA TGATCGAATC CGGCCTCATA ACTTGAAGGT GCACATTCTT GATACTGAAA
481GTTTTGAAAC TACATTTGGC CCTAAGTCAC AGAGGAAACG ACCAAACTTA TTTGCAAGTG
541ATATGCAGTC TCTTATCGAA AATGCTGAAA TGTCCACTGA GAGCTATGAC CAGGGCAAGG
601ATCGTGATTT GGTAACTGAA GACACTGGTG TGAGAAATGA AGCTCAAGAA GAGATCTATA
661AAAAGGGACA GTCCAAAAGA ATATGGGGTG AGCTCTACAA GGTGATAGAT TCATCAGATG
721TTGTAGTTCA AGTTCTTGAT GCTAGAGATC CAATGGGTAC TCGTTCCCCT CACATTGAAA
781CTTACCTGAA GAAGGAAAAA CCTTGGAAAC ACCTCATTTT TGTACTTAAC AAATGTGACC
841TTGTTCCAAC CTGGGCAACA AAACGGTGGG TTGCTGTCCT CTCCCAGGAT TATCCAACAC
901TTGCTTTCCA TGCAAGCCTT ACTAACCCGT TTGGCAAGGG AGCATTCATT CAGCTTCTGC
961GGCAGTTTGG AAAGTTGCAC ACTGACAAGA AACAGATCAG TGTTGGGTTC ATTGGCTATC
1021CAAATGTTGG CAAGAGCTCT GTGATAAATA CATTGCGTTC TAAGAAAGTT TGCAACGTGG
1081CTCCCATTGC AGGTGAAACA AAGGTCTGGC AGTATATTAC TTTGATGCGT CGGATATTCC
1141TGATTGACTG TCCAGGTGTG GTTTACCCCT CTGAGGACTC CGAGACAGAC ATTGTGCTAA
1201AAGGAGTTGT TCAAGTAGAA AAAATTAAGA GTCCTGAAGA CCACATTGGT GCTGTACTTG
1261AACGAGCAAA GCCAGAATAT ATCAGCAAAA CATACAAGAT TGATTCTTGG GAGAATGCTG
1321AGGACTTTCT TGAGAAGCTC GCTTTCCGGA CTGGGAAGTT ACTAAAGGGT GGAGAGCCCG
1381ACTTGCAGAC TGTGGGTAAG ATGGTCCTCA ATGACTGGCA GAGGGGCCGG ATTCCTTTCT
1441TTGTCAAGCC ACCCAATGCA GAGCCACTTG TGGCCCCCCA GCTTCTACCC TCCTCATCTT
1501TGGAAGTTGT CCCAGAAGCA GCCCAGAACA ATCCAGGGGA GGAAGTCACA GAAACTGCAG
1561GTGAAGGGTC AGAATCCATC ATTAAGGAAG AAACAGAAGA GAACAGTCAC TGTGATGCTA
1621ACACAGAGAT GCAGCAGATT CTCACACGAG TTCGGCAGAA CTTTGGTAAA ATCAACGTGG
1681TGCCTCAGTT TTCTGGGGAT GACCTGGTTC CTGTGGAGGT GTCAGATCTT GAGGAAGAGC
1741TTGAGAGCTT TTCTGATGAA GAGGAGGAGG AACAGGAGCA ACAAAGAGAT GATGCGGAAG
1801AGTCTTCCTC GGAGCCTGAG GAGGAAAATG TGGGAAACGA CACCAAAGCC GTTATTAAAG
1861CACTGGATGA GAAGATTGCC AAATATCAGA AGTTTCTAGA CAAAGCCAAA GCCAAAAAGT
1921TTTCAGCAGT CAGAATATCC AAGGGACTGA GTGAAAAGAT ATTTGCAAAA CCTGAAGAAC
1981AAAGAAAAAC ACTGGAAGAA GATGTAGATG ACAGAGCACC TTCCAAAAAG GGAAAGAAGC
2041GGAAGGCACA AAGGGAAGAG GAACAGGAAC ATTCAAATAA AGCTCCCAGG GCGCTTACAT
2101CAAAAGAACG GAGGCGAGCA GTACGACAGC AACGGCCGAA AAAAGTTGGT GTGCGCTACT
2161ATGAAACACA CAACGTGAAA AATAGGAACA GGAACAAAAA GAAGACCAAT GACTCAGAGG
2221GACAGAAACA CAAACGCAAA AAATTCAGAC AAAAGCAGTA CCCAACTTTC TTGTACAAAG
2281Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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