Construct: ORF ccsbBroadEn_03125
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002792.1_s300c1, BRDN0000455400
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OBP2A (29991)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29991 | OBP2A | odorant binding protein 2A | NM_014582.3 | 100% | 100% | |
| 2 | human | 29989 | OBP2B | odorant binding protein 2B | NM_001288987.1 | 96.4% | 90% | (many diffs) |
| 3 | human | 29989 | OBP2B | odorant binding protein 2B | NM_014581.3 | 96.4% | 90% | (many diffs) |
| 4 | human | 29989 | OBP2B | odorant binding protein 2B | XM_006717086.3 | 77% | 70.5% | (many diffs) |
| 5 | human | 29991 | OBP2A | odorant binding protein 2A | NM_001293189.2 | 74.5% | 56.4% | 388_452del;576_684del |
| 6 | human | 29989 | OBP2B | odorant binding protein 2B | XM_017014654.1 | 73.8% | 68.9% | (many diffs) |
| 7 | human | 29989 | OBP2B | odorant binding protein 2B | XM_024447527.1 | 73.8% | 68.9% | (many diffs) |
| 8 | human | 29991 | OBP2A | odorant binding protein 2A | NR_120603.2 | 67.9% | 1_55del;443_491del;615_751del | |
| 9 | human | 29991 | OBP2A | odorant binding protein 2A | NM_001293193.2 | 65.3% | 46.4% | 70_71ins134;254_318del |
| 10 | human | 29991 | OBP2A | odorant binding protein 2A | XM_017014656.1 | 60.7% | 46.4% | 1_156del;544_608del;732_840del |
| 11 | human | 29989 | OBP2B | odorant binding protein 2B | NR_110242.1 | 60.4% | (many diffs) | |
| 12 | human | 29989 | OBP2B | odorant binding protein 2B | NR_110243.1 | 50.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 579
- ORF length:
- 510
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGACCCTG TTCCTGGGTG TCACGCTCGG CCTGGCCGCT GCCCTGTCCT 121 TCACCCTGGA GGAGGAGGAT ATCACAGGGA CCTGGTACGT GAAGGCCATG GTGGTCGATA 181 AGGACTTTCC GGAGGACAGG AGGCCCAGGA AGGTGTCCCC AGTGAAGGTG ACAGCCCTGG 241 GCGGTGGGAA CTTGGAAGCC ACGTTCACCT TCATGAGGGA GGATCGGTGC ATCCAGAAGA 301 AAATCCTGAT GCGGAAGACG GAGGAGCCTG GCAAATTCAG CGCCTATGGG GGCAGGAAGC 361 TCATATACCT GCAGGAGCTG CCCGGGACGG ACGACTACGT CTTTTACTGC AAAGACCAGC 421 GCCGTGGGGG CCTGCGCTAC ATGGGAAAGC TTGTGGGTAG GAATCCTAAT ACCAACCTGG 481 AGGCCCTGGA AGAATTTAAG AAATTGGTGC AGCACAAGGG ACTCTCGGAG GAGGACATTT 541 TCATGCCCCT GCAGACGGGA AGCTGCGTTC TCGAACACTT GCCAACTTTC TTGTACAAAG 601 TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac