Transcript: Human NR_120603.2

Homo sapiens odorant binding protein 2A (OBP2A), transcript variant beta, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
OBP2A (29991)
Length:
751
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_120603.2
NBCI Gene record:
OBP2A (29991)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_120603.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000059729 GAATCCTAATACCAACCTGGA pLKO.1 497 3UTR 100% 2.160 3.024 N OBP2A n/a
2 TRCN0000059732 GATCGGTGCATCCAGAAGAAA pLKO.1 269 3UTR 100% 5.625 3.375 N OBP2A n/a
3 TRCN0000059730 CCTGGCAAATTCAGCGCCTAT pLKO.1 314 3UTR 100% 4.050 2.430 N OBP2A n/a
4 TRCN0000378861 GAACTTGGAAGCCACGTTCAC pLKO_005 235 3UTR 100% 4.050 2.430 N OBP2A n/a
5 TRCN0000250150 GGAGGCCCTGGAAGAATTTAA pLKO_005 515 3UTR 100% 15.000 7.500 Y OBP2B n/a
6 TRCN0000059728 CCCTGGAAGAATTTAAGAAAT pLKO.1 520 3UTR 100% 13.200 6.600 Y OBP2A n/a
7 TRCN0000250153 GACTCTCGGAGGAGGACATTT pLKO_005 556 3UTR 100% 13.200 6.600 Y OBP2B n/a
8 TRCN0000250152 GAAGGCCATGGTGGTCGATAA pLKO_005 148 3UTR 100% 10.800 5.400 Y OBP2B n/a
9 TRCN0000378935 TGGTGGTCGATAAGGACTTTC pLKO_005 156 3UTR 100% 10.800 5.400 Y OBP2A n/a
10 TRCN0000378859 TGGAGGAGGAGGATATCACAG pLKO_005 114 3UTR 100% 4.050 2.025 Y OBP2A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_120603.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03125 pDONR223 100% 67.9% None 1_55del;443_491del;615_751del n/a
2 ccsbBroad304_03125 pLX_304 0% 67.9% V5 1_55del;443_491del;615_751del n/a
3 TRCN0000476475 GCCCTAAGATTCAAAGCCGCAAAT pLX_317 60% 67.9% V5 1_55del;443_491del;615_751del n/a
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